K29849

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K29849

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K29849

Determination of introduced cDNA(s)

  • J013104C16 - Rice Full-length cDNAs - Original: J013104C16

    full reading [+] show sequence

    Nucleotide sequence: J013104C16 - full reading 
    GACTCGAGTT TATTCTTCCA TGCTCCACAG CTCCAGCCAG CTGCGGGGGT 
    CGATGGTGCT TCACTCCCCA ATCCCCACAG CAGTAGGGTT TGGAGAACTT 
    GGCGTCGATC GACTCTCCTC CTCCGGTGCG GCGGCCGAGG CTGCCGACTG 
    CGAGTCTGCG AGGCCTCCAT CTCTTCTTGC TCGCATCCTC CATTGTGAGT 
    TCCAAGCTAT TTGCTGCTCG CGCTGCAGCC TCGACGCACG CCGCCTGTTC 
    GACGGAATGC CTCCGGGGGA AGCCCCACCT CCGACCGGCG GCGATAGGAT 
    AGGGGGTCTG CCGGATGGTG TCCTCCAACA CATCCTCGGC TTCCTCCCGC 
    CGCATGAGGC CGTGCGGACC TGCGTGCTCG CGCGGCGCTG GCGCCACCTC 
    TGGAAGTCCG TCGCGGCCTT GCGCATCACC AACTGGGACT GGAGGAAGGT 
    GGTGCCCATG GAGGAGTTCC GGTATTTCGT GCACCACCTC CTGCTCCGCC 
    GCGGGCGCGC TCCTATCGAC GAATTCGAGC TCGATCTCGC CGAGCTGTCC 
    GACCGGGACA CCCTCCGCGT GAACCGCTGG TTCCGGCATG CAGTGATGTG 
    CCAGGCCCGG GTGCTACGGC TGGATATCCG TGTGAGCAGG GGATCCGAGC 
    TCGAGCTAGA AAACCTGCCT GTCGTCTCCC GGCACTTGCA AAAGCTAGAT 
    CTTTATGGTG TCAAATTGAT GCACAATTTC CTTGATTTCT CGAGCTGTCC 
    GGTGCTGCAA CATCTAGAGA TTGCTGGTTG CGACTTGTCT GATTCCAATG 
    CCAGGAAGAT CTCTTCCCTA TCCATAAAAC ACCTAAACAT CTCCGGTTGC 
    AATTTCAGCG ATACTTTCCA CACACACATT TATGCGCCGA ATCTCCTCTC 
    ACTTGGTCTA GTTAATTATA TGAACCAGTC TCCTGTGTTT GAGGGTATAC 
    CGTCCGGAAG CTTTATCACA GGCCAAGAAG TTGGTGTTGT TAGTTCAGGA 
    ACAAGATTTT AATTTCGAAA TGTACTGGCA ACGGTGCCCT ACATTTAGCA 
    AGTTGAAGAC TTTGTTAATC AGTGCATGCG CATCTGCTGT TCTTGACTTT 
    GAAGCTGTTA GTTGCATCCT TCGACACTCA CCAGTTCTAG AGAATCTCAC 
    TCTTCAGTTT CATCGCATGG GACATGGACC GGATAGGGTG GAAATGAAAG 
    GAAGCTATAG TCGAATGGAT AGGTCATCTG CAATATCAGA ATATCTTAAG 
    ATAGTTGTAG TCAGATTTGA TGAGATTGAT GATTTAGTTA TCAAAGTTTT 
    GAAGTTCCTC TCTGCATTCA GTATTCGTTT CAGTTTCGAG TAGCGTTTAA 
    AAGTTTAGCT GTCCATGGAT CTACTACTCT ATCACCATTC AGAGGGTTGG 
    TTCTTAATTT GCAGTGACTG ACGAGGGTGC CGTGTTCTGT CTGTAGGTAT 
    CATGTCAGTT CCAGCCATAG CCCGTAGGGA CGGTTTAGAA CTGACGAAAT 
    GACCTAGTCA GAATTTGTAA TTGCAGGGCC CTAAAAGGGA TGTGGAAGTG 
    TAGGTAATCT AGTTAGGCCT TATATACCAC CCAACTATTC TATGCTATGT 
    CTTTTGGACT CTAGTTTAAC TCGGATTCAT TCTCTCTGGG AAGATATGAA 
    TCTGCTACCT TGAGCATAGC TGGCTCTGTC AATATTGCTC CGCCTGAAAT 
    GTTTAATGAG GGGAGTAGTA TGCACATTTG ATACCCTCTA TCCCAAAATA 
    TAAAAACCTA TAGTACTATA TGTGATATTC TTGTCCATAT TCGAAGTTGT 
    CTTGTCTTGG TTCT

    Gene models with high sequence identity

    1. AT3G58860.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 2e-12; Score: 71.60

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    superfamily RNI-like 4.1e-10
    superfamily F-box domain, Skp2-like 9.1e-10
    HMMPfam F-box domain, cyclin-like 0.00045
    ProfileScan F-box domain, cyclin-like 9.656
    Gene3D no description 2.2e-12

    See the detailed result >

    AT3G58860.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G58900.4); Has 2117 Blast hits to 2070 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2115; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR