K30001

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30001

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30001

Determination of introduced cDNA(s)

  • J033079C01 - Rice Full-length cDNAs - Original: J033079C01

    full reading [+] show sequence

    Nucleotide sequence: J033079C01 - full reading 
    GGGTCCATTT CGGAATCGTC GTCTCGCCTC CACTTCCGAC TTCCGAGTCG 
    TCTCGCCTCG CCGGCGCAGG ATGGCGGCGG CGACGACCGC CGCGGCGGCG 
    GCGAGGGTGG GGCTGCTGTA GACGAGAGGA TGTGCGCGCA CGCGACGCCC 
    GACGGGGAGG AGCACCCGGA GAACCCCGAG AGGCTGCGGG CCATCTGGCG 
    CAAGCTCTCC GCCGACGGCG TCGCCTCCAG GTGCATGATC ATGAAAGCGA 
    AGGAAGCTGA GGACAAGTAT ATAGCTTCTG TCCATAGCCA GAACCATATC 
    AAGCTGATGA GGAGTATCAG CTCAAAAGAA TATGATTCCC GTCGAAACAA 
    GATTGCTAGA AAATTTAATT CCATTTACTT CAACAAGGGC TCCTCAGAGT 
    CTGCTTTTCT TGCAGCTGGT TCTGTGATTG AGGTAGCTGA GAAGGTTGCT 
    GCAGGAGAGT TAAGTTCTGC TATTGCTCTA GTCCGACCTC CAGGTCACCA 
    TGCTGAACAT AATGAGGCAA TGGGTTTTTG CCTCTTCAAC AATGTAGCAA 
    TTGCTGCTGA TTATCTCTTA AATGAGAGGA CTGACTTAGG TATCAAGAAG 
    ATATTGATTG TCGATTGGGA TGTTCATCAT GGAAATGGCA CACAAAAGAT 
    GTTTTATAGT GATCCTCGTG TATTGTTCTT TTCAGTTCAC AGATTTGATT 
    ATGGCAGCTT CTATCCTGCT GAAGGGGATG CATCTTACTG TTTCATTGGG 
    GAAGGAGATG GTAAAGGGTA CAACATTAAC GTGCCCTGGG AACATGGAAA 
    ATGTGGTGAT GCAGATTATA TTGCTGCATG GGACCATGTA CTACTTCCTG 
    TTGCTGAAGC ATTTAACCCT GATATAGTCT TGGTGTCTGC TGGGTTTGAT 
    GCAGCACTGG GTGATCCTCT TGGTGGCTGC TGCATCACTC CCAATGGATA 
    TGCTCTGCTA CTGACAAAGC TCTTAGGTTT TGCCCAAGGG AGGATAGTGA 
    TGGCTCTTGA AGGAGGCTAT AACCTTAGAT CCATAGCAAA TTCAGTTAGT 
    GCTTGTGCTA AAGTTTTGTT GGGAGACAAG TTCAGATTTG ACACTCCTGA 
    TATGCAACCG TTTGAATCTT CATGGAGAGT TATACAAGCG GTACGTGATG 
    AATTGAAGAC GTTCTGGCCT GTTCTGAGTA ATAGATTGCC AGAGAATATA 
    TCATTGAGGA GTAGGCCCTC ACAAATTGAG CTGTATTCTT CTGGTTCTGA 
    CTCTGAAGTT GAAGATCTCC CTGATGCTAT TGCTTCTGTC AATATTATTC 
    AAATTACTTA TGGTATTATA AGTGAAAGCC TCTCAAAGTT GAACCTTGAT 
    GAAGACAAAA TCGCAACAAA GACCACCTCA AGTAATGTAA TGGTTGAAGG 
    TCCAACTGAT TCAGTTGAAC CACAAAATGA TGGATCTGCT GCGGTGTCAA 
    CTGAAGGAAT ATCATCTCTA TCTTCTACTT GGAGATCAGA ACTGTCAAAA 
    GTATATGTTT GGTATGCCAG CTTTGGTTCA AACATGTGGA CACCAAGGTT 
    TCTGTGCTAC ATCCAAGGGG GAAAGGCTGA GGGTATGAAT ATACCATGTT 
    TTGGATCTCA TGACACAAGC CCACCAAGAG GTTCCATGTG GAAGACTGTG 
    CCTCATAGAT TGTTTTTTGG TAGATCCTCT ACTCCTTGCT GGGGAACTGG 
    TGGTGTTGCT TTTCTCAACC CTGAGATAAA CCACACTGAG AACTCCTATG 
    TCTGCATGTA TAAAATAACG CTCGAGCAGT TCAATGATGT ATTGTTTCAA 
    GAGAATCGTT TAGTGAAGGA GAACGGCGAA AGTGGAAAAA CTGAGTCTCC 
    TGACTCTCCT TTGATTGGCT TGTCTGAAAT AGAGTTTGTT TCCAGAAACA 
    AGGGTGTCCA CCTTGCACCT ATTAAGGATA GCTGGTACTC CAATGTACTT 
    TACCTTGGGG AGGAGGATAA CCTTCCAATT CTTACAATGA CATGCCCGTC 
    ATCAGACGTA GAGCGATGCA GATCCGGAGA GCTGCCATTG TGTCCTCCAT 
    CCAAGACCTA CTCCGCCACC CTGATAAGGG GACTAATGGA AGGGAAGCAC 
    CTGGATGCAG ATGCGGCCGC TAGTTACATC AACACTGCAG CTACCAGAGG 
    CCTGTGAAGG CTGCTTCCCT ATGCATTATG GTTTGTAGTT TTGCACTAAG 
    CATGTAAGTG GCTAACCCAC GAATCCACTT ATTTTCACTT ATAAGTGGGT 
    TTGCAGATTA GCCACTTACG CGCTTAGTTT GTACAGCCAG TAGGAGCGTA 
    CTAGGACTGT AGGAGGAATG ATGAGTAGGT TTGCAGGACT GTAAAGATAG 
    TGCGTTGATC ATTCAGGACC ACGGAGGCTT ATGTAGAGGC CTCGTGAATG 
    TCCTGCCAAT TGGGGAATCT GGACCCGATC AAGTTTCCCT AGGATTGTTA 
    AGAATCTAGC TAGCGCTTGT ACCCTGGGTT GGTCATTGTC TCATTGGTGC 
    TCTCCGGATT GGTTTGTTTT GGGGTGGAAA AAAAAACACT AGTCGATGTT 
    GCCTGGTTTT TCATGCTGTT ACCTGGCGAG GAAATGACGA TTTCTTGTG

    Gene models with high sequence identity

    1. AT5G61060.1 [+] show detail - histone deacetylase 5
      E-value: 0; Score: 740.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Histone deacetylase superfamily 1.2e-93
    FPrintScan Histone deacetylase superfamily 9.4e-09
    FPrintScan Histone deacetylase superfamily 9.4e-09
    superfamily Arginase/deacetylase 7.5e-108
    HMMPanther HISTONE DEACETYLASE HDA1 8.9e-231
    HMMPanther Histone deacetylase superfamily 8.9e-231
    Gene3D Histone deacetylase superfamily 3.3e-99

    See the detailed result >

    AT5G61060.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 5
    Curator Summary
    Encodes a member of the histone deacetylase family.
    Computational Description
    histone deacetylase 5 (HDA05); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase of the RPD3/HDA1 superfamily 18 (TAIR:AT5G61070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR