K30032

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30032

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30032

Determination of introduced cDNA(s)

  • J023112G04 - Rice Full-length cDNAs - Original: J023112G04

    full reading [+] show sequence

    Nucleotide sequence: J023112G04 - full reading 
    GGGTTAATCT GTAGGCTGCT ACCTCGCTAG CTCCGTCCGC CGTCGTCCGT 
    CCGCGAGCCA CCACCAACCG GCCGGCCGCG CGCGCGCGCC CATGGACAGT 
    AAGGACAAGG AGAAGGAGCA TGAGCAGACC GCGTCGGGCA GGAACCCCGA 
    CGTGAACGAC GTCGAGGAGG AGGAGGAGGA CGAGGAGGGC AACAAGCGCG 
    CCGTCGTGCT CGGCCCCCAG GTCCCCCTCA AGGAGCAGCT CGAGCTCGAC 
    AAGGATGATG AGAGCCTGAG GAGGTGGAAG GAGCAACTCC TCGGGCAGGT 
    TGATACTGAA CAGCTTGGAG AGACTGCTGA GCCGGAGGTG AAGGTGCTGA 
    ACCTGACCAT CCTGTCGCCG GATAGGCCGG ACCTTGTACT GCCGATCCCG 
    TTCGTCCCCG ACGAGAAGGG CTACGCCTTC GCGCTCAAGG ACGGGAGCAC 
    TTACAGCTTC CGCTTCAGCT TCATCGTCTC CAACAACATC GTGTCAGGCC 
    TCAAGTACAC CAACACTGTC TGGAAGACTG GAGTAAGAGT TGAGAACCAG 
    AAGGTGATGC TGGGGACATT CAGTCCCCAG CTAGAGCCCT ACACATATGA 
    GGGTGAAGAG GAGACCACCC CAGCTGGCAT GTTCGCAAGA GGTTCCTATT 
    CTGCTAAACT AAAGTTTGTT GATGATGATG GCAAATGCTA CTTGGAGATG 
    AGTTACTACT TTGAGATTAG GAAGGAGTGG CCAACCATCC AATGATGTGT 
    GGAACTAAAA AAGGGCTTCA GAAACATGTT AGCTGCTAGC TAAGCCAAGT 
    CAGATGCGCT GTTGCTTCTA GAAATGATTC AATGTGTCGT CATCGTTAAA 
    CGCCTTTTAA TTTGTTTTGA GCTTGTCACA CTTTCTTTTT TCTCTTTTTC 
    TTCCTGTTCT TCGGTCGCAT AATGTTTATT CAAACCTATA TAATCGATTC 
    TCTATACATG GAGACGCGCT GATATATATT TATGTACTAC TGAATTCTGT 
    TGTTTACTTG TTTGCCTGAA ACACACCAGC TGATCAATTC CTTTGAGCTA 
    ATGATTAATT GTCCTAGACA TGCACTTTCA GATCG

    Gene models with high sequence identity

    1. AT3G07880.1 [+] show detail - Immunoglobulin E-set superfamily protein
      E-value: 2e-59; Score: 226.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RHO GUANINE DISSOCIATION INHIBITOR-RELATED 1e-102
    HMMPanther RHO protein GDP dissociation inhibitor 1e-102
    Gene3D RHO protein GDP dissociation inhibitor 1.1e-57
    HMMPfam RHO protein GDP dissociation inhibitor 5e-67
    superfamily Immunoglobulin E-set 3.1e-70

    See the detailed result >

    AT3G07880.1

    Model type
    Protein coding
    Short Description
    Immunoglobulin E-set superfamily protein
    Computational Description
    SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho GDP-dissociation inhibitor activity; INVOLVED IN: root epidermal cell differentiation, cell tip growth; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO protein GDP dissociation inhibitor (InterPro:IPR000406); BEST Arabidopsis thaliana protein match is: Immunoglobulin E-set superfamily protein (TAIR:AT1G62450.1); Has 660 Blast hits to 660 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR