K30111

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30111

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30111

Determination of introduced cDNA(s)

  • J023020H01 - Rice Full-length cDNAs - Original: J023020H01

    full reading [+] show sequence

    Nucleotide sequence: J023020H01 - full reading 
    TTTGCATATT TGGTTGGGAG AATCTCCCTC GAACTCTTCT CATGTACTTC 
    ACAAACGTAA TGCTACCTCA GGAAGGGTAT TTCCACTCAG TTGTATGCAA 
    CTCAGACTTC CGTAACTCCA CAGTTAACAG CGACATGCGG TATATGGAAT 
    GGGATGATCC ACCCCAGATG GAACCCCATT TTCTGAACAC GACACATTAT 
    GATGAGATAG TGGAGAGCGG AGTGCCTTTT GCTAGAAAGT TTCGGGAGAA 
    TGAACCGCTG CTGGACAAGA TTGATGAAAG AGTACTCCAC CGTTGGCGTC 
    ACAGACCTGT TCCTGGTGCC TGGTGCACAG GCAGAAAAAG GTGGTTCAAT 
    GATCCATGCT CCCAATGGAG CAATGTCAAC ATTGTAGGAC CTGGTCCCCA 
    GGCTGAGAAG TTCCGCAAAC ATATGAATCA GATCATAGAG GAATCTGCAT 
    CAGGCAACAA CTCATGCAAG CAATAGCAGC AATGAAGCGC GAGATTTCAC 
    TTCCCATGTT TGAAGCGATG AGCTTTTCTC ATTTTGCATA GAGGGGCTCT 
    TCACGAACTT CAGCAGTTAA CGCTTCCAGA GCGAACATTT TTGCACCTGG 
    GTTACAAGCA CACGTCCAAA GGTGAGATGG GTTTATTCTT TCCAGATTTT 
    TTGGTAACTG TCATGGCTTC AAGGGCCTCA CTGCATAGCG CATACTAGCT 
    TAGTTGGAAG TCAGAGTGCT GATGGTCGGA GCACCAAAGC TAATAGGCAG 
    TGTAATTATT AGTGATCAGT TGAATGACTT GTGCGACTGT TTATAGAACT 
    GATGGAATTC TGGGTGCTCC CATACAGGAT TGAGAAAAAT GAAGAGTGGG 
    TGATGGTGGT TGGATTCTTA CTGTTGTGGT T

    Gene models with high sequence identity

    1. AT1G71070.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
      E-value: 5e-51; Score: 198.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Core-2/I-Branching enzyme 3e-09
    HMMPanther GLYCOSYLATION ENZYME-LIKE PROTEIN 1.3e-61
    HMMPanther Glycosyl transferase, family 14 1.3e-61

    See the detailed result >

    AT1G71070.1

    Model type
    Protein coding
    Short Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
    Computational Description
    Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G39990.1); Has 951 Blast hits to 950 proteins in 117 species: Archae - 0; Bacteria - 44; Metazoa - 555; Fungi - 0; Plants - 318; Viruses - 14; Other Eukaryotes - 20 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR