K30137

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30137

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30137

Determination of introduced cDNA(s)

  • J013056B07 - Rice Full-length cDNAs - Original: J013056B07

    full reading [+] show sequence

    Nucleotide sequence: J013056B07 - full reading
    GATCTCCCCA TCCGCCATTG TTGTGTTCTC ATCCTCTTCT TCCATCTCTC 
    TCTCTGTGCG TGCTCTCCGA CGTCTCTCCT CTCCCTCTCG CGTGCTTGGT
    CGCTGTAGGA GGGGGTTCAA TTGATTTGAG GTAGCCATGG CTGAGGCACT
    GTGCAGCGGC AGCGTCGCGT CCCCGTGCGG GGAGGTGGGT GTGGGGTTCG
    CCGCCGGCCT TGTGAGGGGC GCCGCGGCGG CGGCGGCGCT CGCGGAGTCT
    GTGCCGATTG GTGGGTACAG CAGCAAGAGC ACGTTCCCGA GTGGGAGGGT
    GGCGCTCACG GAGAGGAAGG CGAGGCCCCT GCCACGGAAT CTCGAAGCGG
    CGCATGGGCA GATGAACCTG ACGATTGGGA AGGCCATGAG GTGGTGGGAG
    AAGTGCCTGC AGCCCAACAT GAGGGAGATC GAGTCGGCGC AAGACCTCGC
    CGACTCCCTC CTCAACGCCG GCGACAAGCT CGTCGTCGTC GACTTCTTCT
    CCCCGGGCTG CGGTGGCTGC CGCGCCCTAC ACCCCAAGAT TGCTCAACTA
    GCCGAGAAGA ACCCGGAGGT GCTGTTCTTG CAAGTGAACT ACGAGAAGCA
    CAAGTCAATG TGCTACAGCC TCCATGTTCA TGTTCTGCCA TTCTTCAGGT
    TCTACAGGGG AGCTCAGGGC CGTGTCAGCA GCTTCAGCTG CACAAACGCA
    ACTATCAAGA AGTTCAAGGA TGCACTTGCC AAGCATGGTC CGGACAGGTG
    TGGCCTCGGC CCGGCGAAGG GGCTCGAGGA GTCGGAGCTC ATGGCGTTGG
    CCATAAACAG GGACCTGAAC TTCACCTACA CACCAAACCA AGACCTTGTC
    CCAATTGCAG ACGCCCTCCT GAAGGAAGCT GCTGCACCTG GAGGTCCATG
    GCTGCCATTG CCCGCAACGG CGACGCAGCT GTTCATTCAG GGATCTGAGA
    ATTCGCTGTT GTCATCTGGA AGATAGCCGG TGGTTCGACG GCAAGATTGG
    CTTCAATTTG TACATATTTT TCCGCTTGTT CTAGCCTGAT GTTATGACAT
    GCTGATGCGC AGGCTCATGA TTTTTGTTTA TGAGCCTGCT GAGTGCTGGA
    GGCATGAAAT TCCTTGCCTG ACGGACCTGT ATGCGTGATG CACGTCTGCA
    TCGAAAATTG AACATGCTAG ATTCATTCAT GAT

    Gene models with high sequence identity

    1. AT1G08570.2 [+] show detail - atypical CYS HIS rich thioredoxin 4
      E-value: 1e-73; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Thioredoxin-like fold 7.1e-30
    HMMPfam Thioredoxin domain 5.8e-15
    Coil coiled-coil 0
    HMMPanther THIOREDOXIN-LIKE 5.4e-73
    HMMPanther Thioredoxin, core 5.4e-73
    ProfileScan Thioredoxin-like 10.721
    Gene3D Thioredoxin fold 1.8e-18

    See the detailed result >

    AT1G08570.2

    Model type
    Protein coding
    Short Description
    atypical CYS HIS rich thioredoxin 4
    Curator Summary
    Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.
    Computational Description
    atypical CYS HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 2537 Blast hits to 2529 proteins in 580 species: Archae - 19; Bacteria - 606; Metazoa - 627; Fungi - 356; Plants - 522; Viruses - 3; Other Eukaryotes - 404 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR