K30141

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30141

Determination of introduced cDNA(s)

  • J023030D03 - Rice Full-length cDNAs - Original: J023030D03

    full reading [+] show sequence

    Nucleotide sequence: J023030D03 - full reading 
    GGCAGCCGCA CTCGCCTCCT CTCCTCCACT CCTCCTCCCG CATCCGCGGA 
    AACCCTAGCC TCCTCTCTCT CTCTCCTCGT TCACTCGTTC CTCGCGCCGC 
    CGCCGCGACC CGCGAGCGGG AGGAGGAGCC ATGGCGCCGA CCAAGGGGGA 
    GGGGCCAGCG ATCGGCATCG ACCTCGGGAC GACCTACTCG TGCGTGGGGG 
    TGTGGCAGCA CGACCGCGTC GAGATCATCG CCAACGACCA GGGGAACCGC 
    ACCACCCCCT CCTACGTCGG GTTCACGGAC ACCGAGCGCC TCATCGGGGA 
    TGCCGCCAAG AACCAGGTCG CCATGAACCC CATCAACACC GTCTTCGATG 
    CCAAGCGTCT TATCGGCAGA CGGTTTTCTG ATGCCTCTGT CCAGAGCGAT 
    ATCAAGATGT GGCCTTACAA GGTTATTCCT GGCCCAGGGG ATAAGCCTAT 
    GATTGTAGTG CAGTACAAGG GTGAGGAGAA GCAATTCTCT GCCGAAGAAA 
    TTTCATCCAT GGTTCTTATC AAGATGCGTG AGATCGCTGA AGCTTACCTA 
    GGGTCAACTG TGAAGAATGC TGTTGTCACT GTTCCTGCAT ACTTCAATGA 
    TTCCCAGAGG CAGGCAACTA AAGATGCAGG TGTTATTGCG GGTCTTAATG 
    TTATGCGTAT CATCAATGAG CCAACAGCTG CTGCAATTGC TTATGGTCTT 
    GACAAGAAGG CGACTAGTGT TGGTGAGAAG AACGTGCTCA TTTTTGACCT 
    TGGTGGTGGT ACTTTTGATG TCTCCCTCCT TACCATTGAG GAGGGTATTT 
    TTGAGGTGAA AGCAACAGCT GGTGACACTC ACCTTGGTGG GGAGGACTTT 
    GACAACCGCC TGGTGAACCA CTTTGTCCAA GAGTTCAAGA GAAAGCATAA 
    GAAGGATATC AGCGGGAACC CCAGGGCTTT GAGGAGGCTC AGAACATCAT 
    GTGAAAGGGC AAAGAGGACC CTCTCCTCCA CTGCCCAAAC TACTATTGAA 
    ATTGATTCCC TCTTTGAGGG TGTTGATTTC TATTCCACCA TCACCAGAGC 
    CAGGTTTGAG GAGCTTAACA TGGACCTCTT CAGGAAATGT ATGGAGCCTG 
    TGGAGAAGTG CCTGAGGGAT GCAAAGATGG ACAAGAGCAC TGTCCATGAT 
    GTTGTCCTTG TTGGTGGTTC AACTAGAATC CCTAGGGTTC AGCAGCTTCT 
    GCAGGATTTC TTCAATGGGA AGGAACTCTG CAAGAGCATT AACCCTGATG 
    AAGCTGTGGC ATACGGTGCT GCCGTCCAGG CTGCTATCCT TAGTGGAGAG 
    GGGAACGAGA AGGTGCAGGA TCTTCTTCTC CTTGATGTGA CTCCACTGTC 
    TCTTGGTCTC GAGACAGCGG GAGGTGTGAT GACAGTGCTC ATCCCAAGGA 
    ACACCACCAT TCCTACCAAG AAGGAGCAGG TCTTCTCCAC CTACTCCGAT 
    AACCAGCCTG GTGTGTTGAT TCAGGTCTAT GAGGGTGAGA GGACACGGAC 
    CAGGGACAAC AATCTCCTTG GCAAATTTGA GCTGTCTGGA ATCCCTCCTG 
    CCCCTAGGGG AGTCCCTCAG ATCACTGTCT GCTTTGACAT TGATGCCAAC 
    GGTATCCTGA ATGTGTCTGC CGAAGACAAG ACAACTGGCC AGAAGAACAA 
    GATAACCATC ACAAATGACA AGGGAAGGCT GAGCAAAGAG GAGATAGAGA 
    AGATGGTTCA GGACGCCGAG AAGTACAAGT CCGAGGATGA AGAGCACAAA 
    AAGAAAGTTG ACGCCAAGAA TTCCCTGGAG AACTATGCTT ACAACATGAG 
    GAACACTATC CAAGACGAGA AGATTGCTTC CAAGCTGCCA GCTGACGACA 
    AGAAAAAGAT TGAGGACGCG GTCGAGCAGG CGATCCAGTG GCTGGACAAC 
    AACCAGCTCG CTGAGGTTGA AGAGTTCGAA GACAAGATGA AGGAGCTGGA 
    GGGCCTGTGC AACCCAATTA TTGCCAAGAT GTACCAGGGT GCTGGTGCCG 
    ACATGGGTGG TGGAATGGAC GATGATGCTC CGGCTGCTGG TGGGAGTGGT 
    GCTGGCCCTA AGATTGAGGA GGTCGACTAA ATCAATACAC CTTCGTATAT 
    GTGATGAGAA AAATATTGAT CATACACCTT TTGTTTTCAA ATCCCAGTTG 
    GCAATCATAC CACTTGGGCT ACTCGTACTT TCTGTTAACT AAAGACTTAT 
    TATCACCTGA TGCTTGAGTT TGGACTTCTA GTCTCAGATT CGAACAGACA 
    TTCAGTAATG TGATGATGTT TCAGTTTTTA CC

    Gene models with high sequence identity

    1. AT5G02500.1 [+] show detail - heat shock cognate protein 70-1
      E-value: 0; Score: 999.99

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    PatternScan Heat shock protein 70, conserved site 0
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    FPrintScan Heat shock protein Hsp70 1.5e-86
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Heat shock protein 70 2.3e-276
    HMMPfam Glutamate dehydrogenase, NAD-specific 5.3e-59
    HMMPfam Glutamate dehydrogenase, NAD-specific 5e-08
    HMMPfam Glutamate dehydrogenase, NAD-specific 1.8e-32
    HMMPfam Glutamate dehydrogenase, NAD-specific 7.9e-24
    Gene3D no description 4.5e-50
    Gene3D no description 8.4e-32
    Gene3D no description 2.9e-76
    HMMPanther HEAT SHOCK PROTEIN 70 (HSP70) 0
    HMMPanther Heat shock protein Hsp70 0
    superfamily Actin-like ATPase domain 1.6e-69
    superfamily Actin-like ATPase domain 5.4e-69
    superfamily Heat shock protein 70kD (HSP70), peptide-bind 6.5e-66
    superfamily Heat shock protein 70kD (HSP70), C-terminal s 2.5e-31

    See the detailed result >

    AT5G02500.1

    Model type
    Protein coding
    Short Description
    heat shock cognate protein 70-1
    Curator Summary
    encodes a member of heat shock protein 70 family.
    Computational Description
    heat shock cognate protein 70-1 (HSC70-1); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to cold, response to virus, response to heat; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: Heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G02490.1); Has 34264 Blast hits to 33945 proteins in 4852 species: Archae - 163; Bacteria - 16558; Metazoa - 3831; Fungi - 1761; Plants - 1266; Viruses - 306; Other Eukaryotes - 10379 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR