K30204

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30204

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30204

Determination of introduced cDNA(s)

  • J013030E05 - Rice Full-length cDNAs - Original: J013030E05

    full reading [+] show sequence

    Nucleotide sequence: J013030E05 - full reading 
    GGTCTTCCTC TGCGGCGCAC GCAGGCGGCG AATCCTCCTC CGTCGACGCG 
    ACTCCTCCTC CGCCGCCCGC CGCTCATCTC ATCCCACTAT GGCAGCCAAT 
    GTTGGGGAAT CCACAAGTGG CAGCAGCAGC GGCGGTGCCG ATTCTGGGGG 
    AAGCTTCGAG TGCAACATAT GCTTTGAGCT TCCGCAGGAG CCTATTGTCA 
    CGCTCTGTGG CCACCTCTTC TGCTGGCCAT GCCTCTACAA GTGGCTGCAC 
    ATCCACTCGC ATTCACCTGA GTGCCCGGTC TGCAAGGCTG TTGTCGAGGA 
    GGATAAGCTT GTCCCCCTCT ATGGCCGTGG TAAGGACCGT GTTGACCCAA 
    GGTCAAAGAA CGTCCCTGGG GCTGACATTC CTAATCGCCC AGCTGGACAG 
    AGGCCTGCCA CGGCTCCGCA GGCCAATCCT AACACCCACT TCCCCAATGC 
    CAACCCCAAC CCTTGGTTCA TGGGTGGAGG CATCCCACTA GCCAATGCAC 
    GGTGGGGGAA TTACACCTTC TCGGCGGCAT TTGGGGGTTT GTTCCCCCTG 
    CTCAGCTTCC AAGTCCATGG GTTCCCAGAT GCAACCGCCT ATGGGCAGCC 
    TGCTGGTTTT CCCTACGGAT ATGGACACGG CCACGGTCAC GGTCATGGGC 
    ACGCGTTCCA CGGCGGACAT GCCCATGCTG CTGCTGCTCC CCGCCATGGA 
    CCGCCTGGGC AACAACAGCA GGCGGATGTG TACCTGAAGG CGCTTCTCAT 
    CCTGGTTGGT TTTCTTGTGA TTGCAAGCCT CATCACATTC TAGGATTGTG 
    CCATCATATT GCTGTGCTTG TAATAAGAGG AATGATTTCC CGAGTTGCTT 
    TCTGATGTTG TGCATTACCT TGCCTCCACA CACGACCCAG TCTGAATCAA 
    GTGGTTCTTT TGCGCAAAGT GTTGATAGAA TTCTTGTATA TACGAAATAG 
    ATGTGGTCGT GTGGAGCATA TGTGTACTGT GGTTCATGAA TAACATGGAA 
    GCTCTGTCTG AATGAACTAG AGCAATGATA CTTATATTGT GTTTTTGATA 
    TGATGATGCT CAGAATGAGC AGGCTATGCA ATTGTTTGGA GC

    Gene models with high sequence identity

    1. AT1G19310.1 [+] show detail - RING/U-box superfamily protein
      E-value: 1e-56; Score: 217.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 3.4e-06
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 4.6e-16
    HMMSmart Zinc finger, RING-type 2.4e-07
    ProfileScan Zinc finger, RING-type 13.345
    HMMPanther RNF5 4.4e-48
    superfamily RING/U-box 1.6e-19

    See the detailed result >

    AT1G19310.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G23780.1); Has 4673 Blast hits to 4665 proteins in 300 species: Archae - 0; Bacteria - 6; Metazoa - 2731; Fungi - 589; Plants - 822; Viruses - 25; Other Eukaryotes - 500 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR