K30315

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30315

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30315

Determination of introduced cDNA(s)

  • J013095N21 - Rice Full-length cDNAs - Original: J013095N21

    full reading [+] show sequence

    Nucleotide sequence: J013095N21 - full reading 
    GGCTGTCCCC TGCTTATCCC CTCCTCCTCC CGGGTTCGCA TTCCGTCGAA 
    CACCATGACG GCGGCGGCGG CGGCAGCGGC GGTGACCCTC CTCCGCCTCC 
    CTCTCGCCCG ACTCTCCTCC CACCTCCGCT CCCTCCCTCC CCGTCCCATA 
    CCGCCCCCTC GGCTCCGCGT CTACACCTCC CACCGCCTCC TCTCCTCCCT 
    CCTAGCTCCC AGCCACGTCC CCGCCGTCTC GTCCCTGGCC GAGGCGGTGG 
    CTGCGCCGGA TGGTGAGGGG GTCGAAGTGG AGGAGGAGGA GGACGAGGAG 
    GAGGAGGCAG AGGCGCGCCC CACCACCTTC GCGCTGCCGC GGCTGCCGCG 
    GCCGAAGCTG AGCGTGAAGG AGCGGAAGGA GCTCGCGTCG TACGCGCACG 
    GCCTCGGCAA GCGGCTCAAG TCGCAGCAGG TCGGCAAGGG CGGCGTCACG 
    CCGTCCGTCG TCGCCGCCTT CAACGACAAC CTCGAGTCCA ACGAGCTCCT 
    CAAGGTGCCT CTCCCGTTTC CCCATCCTCT CGCATTATAA ATTCGTGACA 
    TGATACAACA CATAGTTTAC CTACAAATAC AATGAGAACA AATACATCAA 
    TTTCAGTGTA TGATATACCA ATGGAAATGG GATGCTTCAT CATGCTGCTG 
    AATACTGATA TACAATGATG TCATGTGATT TTGTTTAACT GGGAATTAGG 
    ATCACTGTAG GGTATATTCA TCAATAGTTA TTAAAGTTAA CTAATGCTTT 
    TTATGGTTCG AATCTGATTG TAGGAGTAGA TAGGATGCTG AATTGCTGAT 
    AACCGCATGC TTTTGGTTTA GGTAGACATG CAATATTCAA TTTAACCATG 
    ACTAGGTTGA CCTTGAGTTT TCCTTATTAT TGGCTTGTTC TCTTTCCACC 
    TCGTTTTGAC GGCCCTCATA TTTCTTGTTA GGTAATGCAA AGGGTGGTTT 
    ACATGCTAGC TAATTCTGTG AAAAAAATGG TGATTGCTTT TTTCCAAACA 
    AACAAACCAG CATGAGCTCA TTATTACAGT ACCTTATATG TTATACTAGT 
    CACAGTACAT GTTACAGATG TATTTTCCTC CTGTTTGTAT TCCTTCCACA 
    CAATTGCGCT GGATACAGTC TTTAAACTTC TTAATTGGGT TGTTGTTTTG 
    AACTTTACCC CCATGGCATA TATTAGATAT CCTTAACTTC TTTTGTTACT 
    ATAGGTCATA TGCACGCCTC TTCAAATTGA GAAGTTTTCT GACTTCTAGG 
    GTCTTAAGTG AGTAACAGGG ATTTCAGGTT AAACTTGTTC TGATTGGTCT 
    TGTGTTAGTA TTTTTGGTTT GGCTGAGTTG CATAATTGTT GGGCTTTTTT 
    CTGTTTGCAT TTGGTGGTTT TAACCTATGG TCAGCCCTGC CACAAATCAT 
    ATAGGTAACA CAAAACCATT GTTCATTCGG AAGTCATTAC AACCCACAGG 
    CCTTTTTTTA TTCAAAAGTC TCTCTTTCAA GAAGCAGCAA AATTTGTGTT 
    ATAGTGCAAG CAAGCGATCT GACTTCTAAC CTCTGTGAAT GCATATAGTT 
    ATTAAACCAA AATACTCAAG TTTTTCATAA ATATGGAATT GACTTATACT 
    GAATAAACTC CACATCTTTA TTCTGGCCTA GCCAAGTTGT GACAGACAAT 
    TGTTCGAATT GAGAAGCTAA GTGCCTGTGT CCAACACTTA ATTTGCACAC 
    AAATTTTCCA ATAAGGCTGT GTTCCATGTG TGCCTGTGTT CCATTCTACG 
    TATTTCGTAT GTAAGAGAGC CAATAAGCCT GTAGGATTTA GTGTCTTGTG 
    CCTTTTCTTG CTTTAGTGAG CCCTTTTGTT CGGCTTTCCT TTCTGTGATG 
    TTAAGTTGTT CTTCAACATT CGGCATATGT TATGACAGCT AAAAATTCAT 
    TTGAACTGCC CTGGAGAGCT GCCTGACGTG ATACTACAAC TTGAGGAGTC 
    AACCGGATCC ATTGCTGTTG ACCAAATTGG TCGATCTGTC ATTCTATATC 
    GTCCTAGCAC CAGTAAGATG AAAAAGAGAG AAGAAAGTGC TAGGAATAGA 
    ACAAGATTTG TAAGATCTAG AGAACCATCA GAAGAACAAC CTAGAAGCAG 
    CACAAGCAAG AGATTTATAA AATCTGGAGG AGCATTTAGG CCACAACAGA 
    AGAGAAGACC ATTAGCATCT AAGGAATCGT CGTATGGGCG AAGATAGATG 
    CCACATTCAA TCCTTCATCT TGTTTTTTTT CATTGTCTAG ACTTATGGAA 
    ATCATGTAAA CTTTAGACCA TCTAATTTGA TAATAGATAT TAGTGCTGAG 
    TTTTTATC

    Gene models with high sequence identity

    1. AT4G39040.2 [+] show detail - RNA-binding CRS1 / YhbY (CRM) domain protein
      E-value: 2e-13; Score: 75.10

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA-binding, CRM domain 3.2e-08
    HMMPfam RNA-binding, CRM domain 5.3e-05
    Gene3D RNA-binding, CRM domain 2.9e-05
    BlastProDom RNA-binding, CRM domain 2e-09
    BlastProDom RNA-binding, CRM domain 2e-17
    ProfileScan RNA-binding, CRM domain 8.939
    ProfileScan RNA-binding, CRM domain 8.622
    superfamily RNA-binding, CRM domain 1e-06

    See the detailed result >

    AT4G39040.2

    Model type
    Protein coding
    Short Description
    RNA-binding CRS1 / YhbY (CRM) domain protein
    Computational Description
    RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR