K30330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	decreased size (PATO:0000587) (Seed::Shape::small)

Invisible phenotypes

Elements::Others::Fe

Original: K30330

Determination of introduced cDNA(s)

J033072D05 - Rice Full-length cDNAs - Original: J033072D05

full reading [+] show sequence

GAGCCACACA CTCTATGCTC TCTATCTGCT TCCTAAGCAC ATACAAGCAC 
TACTCTCCAT ACAGCAAGCA GATACAAACA GAAGGATGAA GCTCAGAGTA 
AAAGGCCTCG GCCTCCTTCT TCTCCTTGTC TTGCTTGCTC TTTGCTCCAC 
CATCGACGTC TGCGATGCAA GAAGAGGCAA GCATTGGCGA CCTAGGAGCT 
CACCGAGCTC CTCTCTGCTA AGGAACAAGG GCAAAGGAAA GAAGGGCAGC 
TCCAACCGGC AGCATGGAAG CAACCGGCCG AGCCCGAAGC CGCCACTCAG 
CCCGCCACCG AGTCCTGGTA ATGGCAAAGG ATACCAGAGC CCATACCAGC 
CAAGCCCAAG TCCAAGCCCG AATGCACCTG TAAGCCCAAG CCCTGTCAAT 
GGGAGTGGAC ATGCAAGTCC CAAGTCTCCA ACTCCAAGCT GTGGAAAAGG 
TAATCAGCCA CCATCGCGGC CAACACCAAC ATCACCACAG GGCGCAGTGT 
TTAACGTGGT TGATTTTGGA GCCAAAGGCG ATGGCGTCTC CGATGATACC 
AAGGCCTTTG TAGCAGCATG GGCTGCAGCG TGCAAGCAGG GAGCATCTAC 
AGTTGTCGTA CCATCAGAAC TTGAGTTTCT TGTTGGGCCA ATCTCATTCT 
CTGGGCCTTA CTGCAAACCA AATATTCTGT TCCAGCTGGA TGGAACAATT 
GTAGCCCCAA CCAGTGCTAA AGCTTGGGGT TCTGGTTTGC TTCAATGGAT 
TGAGTTTACC AAACTAAATG GAGTATCAAT TCAAGGCAAT GGCATCATAA 
ATGGTAGAGG ACAACAATGG TGGACCTATT CAGACATAGA TGACGACGAA 
GATGATGACA CACAGTACGA TGTGGAGTTT GAAAGGATGC CACAAGTTAA 
ACCTACAGCA TTGAGATTCT ATGGTAGTTT CAACGTTGTA GTAGCTGGTA 
TCACTATTGT CAACAGCTCG CAGTGCCATC TCAAGTTTGA CAGCTGTCAA 
GGAGTGATGG TCCATGACGT AACAATATCC TCCCCAGAAA ACAGCCTCAA 
CACTGATGGA ATACACCTGC AGAACTCTAA AGATGTCAGC ATTCATCATA 
CCAACCTGGC TTGTGGTGAT GACTGCGTCT CCATTCAAAC AGGATGCAGC 
AATATAAATA TACACAATGT GAATTGTGGA CCTGGCCATG GAATCAGCAT 
TGGAGGCCTA GGCCGGGACA ACACAAAAGC ATGTGTCTCC AATGTTACTG 
TAAGAGATGT CAACATGTTC AGAACCATGA CTGGTGTCAG AATCAAGACC 
TGGCAGGGTG GCTTAGGCTT GGTTCAAGAT GTACGGTTCT CGAACATCCA 
AGTCTCAGAA GTCCAAACAC CAATCATCAT AGACCAGTTT TACTGTGACA 
AAAGAACATG CTCAAATCAA ACATCAGCAG TGGCAGTATC AGGCGTTCAG 
TATGAGAACA TCAGAGGAAC ATTTACTATC AAGCCTGTTC ATTTTGCATG 
CAGTGACAGC TCACCTTGTT CAGGGATAAC TCTTACTGGA GTACAACTCA 
GGCCTGTCCA AATACCCCAC TACCGCCTAA ACGACCCTTT CTGCTGGCAA 
GCTTTTGGGG AGCTCTACAC TCCAACAGTC CCTCCAATTG CTTGCTTGCA 
CCTTGGAAAA CCTGCTGGGA ACAACTTACA GTCATACCAC GACTTATGTT 
GATACACAAA AGTACCTTCA TCCATTGATT GGTGCTTATC CATGAGTGGT 
CGTGAAACTT CCGACCCCTT TGCACCATTG CTTGGCGGTG TGCATATATA 
CAGTTATTCT GATGCCATTG TTACTATAGC ACGTGTCACC CTTCAATTAA 
AGAAAAGATA GATACTTCCA TATG

Gene models with high sequence identity

AT1G60590.1 [+] show detail - Pectin lyase-like superfamily protein
E-value: 5e-140; Score: 495.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycoside hydrolase, family 28	1.3e-86
Gene3D	Pectin lyase fold	3.1e-121
HMMSmart	Parallel beta-helix repeat	8400
HMMSmart	Parallel beta-helix repeat	130
HMMSmart	Parallel beta-helix repeat	2800
HMMSmart	Parallel beta-helix repeat	7300
HMMSmart	Parallel beta-helix repeat	120
HMMSmart	Parallel beta-helix repeat	5900
superfamily	Pectin lyase fold/virulence factor	4.5e-103

See the detailed result >

AT1G60590.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Computational Description: Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G10640.1); Has 4525 Blast hits to 4468 proteins in 546 species: Archae - 6; Bacteria - 1298; Metazoa - 151; Fungi - 1295; Plants - 1596; Viruses - 3; Other Eukaryotes - 176 (source: NCBI BLink).
Link: InterPro Scan - TAIR