K30448

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30448

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30448

Determination of introduced cDNA(s)

  • J023019N04 - Rice Full-length cDNAs - Original: J023019N04

    full reading [+] show sequence

    Nucleotide sequence: J023019N04 - full reading 
    GCTAGCTTCG CCATCCACAT TCTTCTTGCT TCTTGCTCCT CTCTCTCTCT 
    CTCTCTCTCT CTCTCTCTCT AGCTTCCTGC TGCATCTTCC TCAGCCATCT 
    CTTTCATCCT CCCAGTCGTC CCAGGCTGCT TAATTACATA TATCTAGATA 
    TATATATTAT TCTTGTTAAT TTCGATCCAT CAGTGTGCAA TATATATATA 
    TAGTTTTACC TCTAATATTT AGCTTCTTAA TTTCTCCTCA TTTTTCTGCC 
    TGTGCTACTG CATACATGCG TTAATTCATG GTCGCCATGG ATCGCATGGA 
    GATCCGTTTC TTTACTACTC CACTTGTTTT CTCTAGCTAC TAGTTTTCTC 
    TTCTTCTTTT CATCAAACAA TCAATCAATC ATATCCCGTT CTATCTTCAC 
    ACATCAACCC CGTTCCCTGT TCTCCGTTCT CTCTCAGCTG CAGCTAGCTA 
    CCTCTCCTCC TCTCTTCCGA TCTCTCATCA GGATCGGATC GAGGAGGGAG 
    GAGGGAGACC AACGATCGAT CGAGCCATCC AGGATTTACT AGTCAATCAA 
    CAACTTTATA TATCATGCAG CTGATGCATC CACACATCTA GATAACGAGC 
    TAGATAGCTA GCTAGGGATC GAGAAGGAGA GAGAATATAT ACATACTGCA 
    TATATATATG CACATTGATC GAGCAACTAA TCCAGACAGG GATCGACAAG 
    AGAACAAAAG TTCATTCATG TCTCCTAGCT AGCTACTCTT ATCTGCTACC 
    TATCGAGATT CATCTTTGGA TTTCTACAAG GATTTTGATC ACATCATACA 
    CTGATTTTAA CCCAACCAAC CACGACTGAT CAAACCAAGG CAAGCAGAGG 
    CAGGCTCTCA AATATATAGA TAGATAGCGA TCGATCGATC GAAATGGATG 
    GATCTAGTAT GAGCAGCAGC AGCACGCAGC AGCAGGCGCA GGTTCCTCCT 
    GGATTTCGTT TCCACCCGAC GGACGAAGAG CTGGTGGATT ACTACTTCGG 
    AAGAAGGTGG CCGCAAGAAG GATTGATCTC AATGTCATCA AGGACGTCGA 
    TCTCTACAAG ATTGAGCCAT GGGATCTGCA AGAGCGTTGC CGGATCAATG 
    GCGGGTCGGC GGCGGAGGAG CAGAACGAAT GGTACTTCTT CAGCCACAAG 
    GACAAGAAGT ACCCGACGGG GACGAGGACC AACCGTGCGA CGGCGGCCGG 
    GTTCTGGAAG GCGACGGGGC GAGACAAGCC CATCTACGCC ACCAAGCAGC 
    ACAGCCTCCT CGTGGGCATG AGGAAGACGC TCGTCTACTA CCGCGGCCGC 
    GCCCCCAACG GCCACAAGTC CGACTGGATC ATGCACGAGT ACCGCCTCGA 
    GACCACCGAG ACGGCCCCGC CGCAGGAAGA AGGGTGGGTG GTATGCCGGG 
    TGTTCAAGAA GAGATTACCC ACAACAAGAA GAGATTCAGA CCATGACGCA 
    CCTTGCGGCA GCTGGTACGT TGATGAAGAT GCACCGGGCG CCTTCATGTC 
    TCCGATGATG ATCACCAGAT CATCAATATT GCGCCCACAC CAACACCACG 
    CCGGCATCAC GCTGCAAGAG CAACACCTCC ACACCACTTA CAAGCACAGA 
    GACCTCACTA CTAAGATTCA GCAGCTCCAA GTCCCTGCGG CAGGCCATCA 
    TCTCCTCAAC ACCATGCCCC ATGACCTGGA GAGTTCTACT TCCTCCTTCC 
    ATTCTCTTTT GGTCTCACCT GATCACCACC AAATCAACAT GCACCATGCT 
    CAGGCTGATC CCTTCTTTGA CGACATGCAT GCAGTCGATC AAGCCACTAC 
    CACTGACTGG AGAGTTCTTG ACAAGTTTGT TGCCTCTCAG CTTAGCAATG 
    ATGCTACAAA CAAGCCTGCG GATCATTATA CTGATGAAGG AGACATTCTT 
    CAGGTCAGTG ACAAGCAGTA AGAGGTGGCA GCCGCCGATT ATGCGTCCAC 
    ATCAACGTCA AGCAGCCAAA TTGATCCATG GAAGTGATCG ATCCATGCAT 
    GATCGATGCC CTGCACGCAT TTAATCAAGA TATATTATAT CTTATAGATA 
    AAATTATCTC AATAATGATT ATGATCGTAT CGTATCAATT GGACAGATCG 
    ATACAAGTGG TTTGAGCTAC ATATTAATGC CGTGTAAATA AGACTACTCT 
    AGCTAGTACA ACGTGTGGTG TTTGTGTGCT GCTTATATAT ATATTGACCT 
    TCGTACGTGT GTTTCTATAT GAAATAAGGT CATGGAGGAC AAATTAAAAG 
    CTTCATGAAT ATAATCGTGG TTTGTAATAG ATAAACCTCT TCTGCTATGT 
    GATTGTAAAC TTCTGGTGTT TCAACATATG TAACAAGTAC GCCAATATGC

    Gene models with high sequence identity

    1. AT1G12260.1 [+] show detail - NAC 007
      E-value: 4e-61; Score: 233.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily No apical meristem (NAM) protein 6.9e-48
    superfamily No apical meristem (NAM) protein 2.4e-08
    HMMPfam No apical meristem (NAM) protein 2.9e-40
    HMMPfam No apical meristem (NAM) protein 2.3e-06
    ProfileScan No apical meristem (NAM) protein 47.324
    ProfileScan No apical meristem (NAM) protein 10.018

    See the detailed result >

    AT1G12260.1

    Model type
    Protein coding
    Short Description
    NAC 007
    Curator Summary
    Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.
    Computational Description
    NAC 007 (NAC007); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: Arabidopsis NAC domain containing protein 26 (TAIR:AT1G62700.1); Has 3158 Blast hits to 3153 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 15; Fungi - 2; Plants - 3027; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR