K30512

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30512

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30512

Determination of introduced cDNA(s)

  • J033080D22 - Rice Full-length cDNAs - Original: J033080D22

    full reading [+] show sequence

    Nucleotide sequence: J033080D22 - full reading 
    GACGCAGCCG TGGAACTCTC TCCTCCCTCT CCTCCTCACC TACGCATCCC 
    GCGCCCATGG CCGCCGCCGC CGCCGCCGCC TCCACGCCGC CGTGCTGAGC 
    CCACCCCCGA GAGACCTAGC TCACGCCGAG GACGCTACCA CTCCGGCGCG 
    GGCGGCGGCC TCGGGATCGG GGCGGATCAG ATGCTCTCCC TCGGCGCCAT 
    CCGCAAGCTC TGCGCCGCGT TCGACGCCAT CGCGCTCACC GTCATCGCGG 
    CGGGGCTCTC CCGGACCTCG CACCACCCGT TCTCCGCGCA CGCGCACTAC 
    TCCCAGCCGG ACTTCCCCAC CATCGCCTCC TGCCGCGCCG CCGTCGCCAG 
    CTCCAAGTGG CGGCGCCGCC ACCCCTCCAC CACCAAGGAG TCCGCCGGCG 
    TCGAGCCTGC CGAGCCCCCC GTTCTGGTCA GGATCAAGAA CGAGAGGGAC 
    CCGGTGCGGC TGTACGAGCT GTTCAGGGCC AACGCGCACA ACCGCCTCTT 
    GATTGAGAAC CGGTTCGCGT TCGAGGACGC GGTGGCGCGC CTGGCAGGTG 
    CTCGACGGAA TGACCTAGTG GAGGAGATAC TCGAGCAGCA CAAGGCGTTG 
    CCTCAGGGGA GGCGGGAAGG GTTCGTGGTC AGGATCATAG GTCTGTACGG 
    CAAGGCAAGG ATGCCGGACC ACGCGCTGAG CACTTTTCGC GAGATGGGAT 
    TGTATGGATG CCCGCGCACG GCCAAGTCAC TCAATGCCAC GATGAAGGTG 
    CTACTGCGAG CGCGGCTGTT TGATGAGGTC CTTCAGTTGT TCGAGAGTTC 
    AGAGACATAT GGGGTTGAGT TGGATGACAT TTCGTACAAT ACAGTGGTGA 
    AAATGATGTG TGACTTGGGG GAACTTCGAG CGGCATTTCG GGTTATGCAG 
    GAAATGGAGA AGGCGGGGGT GAGACCGGAT GTCATCACAT ACACAACACT 
    CATGGATGCA TTCTATAAGT GTGGCCAGCG TGAGGTCGGG GATGGTCTGT 
    GGAATCTCAT GAGGTTGAGA GGTTGCATGC CAACACTTGC CAGTTACAAT 
    GTGAGAATCC AGTTCTTGGT TAACAGGAGA AGGGGCTGGC AAGCGAATGA 
    TTTGGTGAGG AAAATGTATG CATCAGGCTT AAGGCCAGAT GAGATCACGT 
    ATAATCTAGT TATTAAGGGT TTCTTCATGA TGGGCGAGCA TGAGATGGCT 
    AAGACAGTAT TTGGTGCGAT GCATGGGAGG GGATGCAAGC CAAATGCTAA 
    GGTTTACCAG ACAATGGTGC ATTACCTCTG TGAGAGAAGG GAGTTTGATT 
    TGGCATTCAG GCTGTGCAAA GACAGCATGG AGAAAAACTG GTTTCCAAGT 
    GTTGATACTA TTAACCAACT GCTAAAAGGC CTCATATCAA TTTCAAAGGA 
    CAGGAATGCA AGAGAGATAA TGAAATTGGT AATAGGAAGA AAACCTTCCT 
    ATTCAAATGA TGAAGTGAAA ACCTTCCAGG ACATATTGTC TCTTGGGAAC 
    ACCAGAAGAT AATTTGAGTA TTTGACTGCT GGATGGAATT TTTTGCTGTA 
    TGTCCACCAC ATGTAATTTT AACACTTGGT TGGCACTCAT TTTATGCCTG 
    ACTGAATGGG AGAACAGTGA GGAAATAATG TTGGGAATAC AGGACAGCGG 
    AAACTATGGG GAATGAAATT TTGGACTTGT GGTTATTCAA GCAGCATTGT 
    TCTCAGAATC AATTGATGAC ACAAGGCAGG CATTTTGTTG ACAGTTCCAT 
    TTGTTCTGTT GGCTTGGAGC ACTGAAGGGA AAAAAAAAAC GTATAGATCA 
    ATCTCCGGGA AGTAAATTTT TCTCGGATTG GTGGCAGATA AACATTTTGT 
    ACCTCAACGT TTTGTAGCAT GTACAAGC

    Gene models with high sequence identity

    1. AT1G80150.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 2e-112; Score: 403.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 0.011
    HMMPfam Pentatricopeptide repeat 0.00027
    HMMPfam Pentatricopeptide repeat 0.0016
    HMMPfam Pentatricopeptide repeat 0.00013
    HMMTigr Pentatricopeptide repeat 0.18
    HMMTigr Pentatricopeptide repeat 0.056
    HMMTigr Pentatricopeptide repeat 6.7e-09
    HMMTigr Pentatricopeptide repeat 2.3e-05
    HMMTigr Pentatricopeptide repeat 0.091
    HMMTigr Pentatricopeptide repeat 1e-08
    HMMTigr Pentatricopeptide repeat 0.00023
    superfamily TPR-like 1.1e-12
    ProfileScan Pentatricopeptide repeat 6.127
    ProfileScan Pentatricopeptide repeat 12.09
    ProfileScan Pentatricopeptide repeat 7.52
    ProfileScan Pentatricopeptide repeat 10.523
    ProfileScan Pentatricopeptide repeat 11.268
    ProfileScan Pentatricopeptide repeat 7.761
    ProfileScan Pentatricopeptide repeat 8.572
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3.2e-75

    See the detailed result >

    AT1G80150.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: fruit; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G36680.1); Has 20922 Blast hits to 6391 proteins in 198 species: Archae - 3; Bacteria - 20; Metazoa - 73; Fungi - 116; Plants - 20269; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR