K30551

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30551

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30551

Determination of introduced cDNA(s)

  • J023078B01 - Rice Full-length cDNAs - Original: J023078B01

    full reading [+] show sequence

    Nucleotide sequence: J023078B01 - full reading 
    GATCAGCTTG TAATTGACAG CTGCAAATGT GGATGGAGAA CTTACCCAAG 
    TTTAAAATTA TTATTGGCAG GGATGTGACG GATCGGTGTT GCTGAACGCG 
    ACGGCGGCGA GCGGGCCGGC GGAGAAGGAC GCGATGCCGA ACCAGAGCCT 
    GGACGGGTTC TACGTCATCG ACGCCGCCAA GGCGGCGCTG GAGAAGGAGT 
    GCCCCGGCGT CGTCTCCTGC GCCGACATCC TGGCGCTGGC GGCCAGAGAC 
    GCTGTCTCCA TGGCTGCCGG GAACATCAAT GGCGCGAGCC TTTGGCAAGT 
    CCCGACGGGG CGGCTCGACG GCCGCGTGTC GTCGGCGGCG GAGGCCGTGG 
    CCAACCTACC GTCTTCTTTC GCGGATTTCG CTAAGCTCAA GGAGCAGTTC 
    GGTTCCAAGG GCCTAAATGT GCAAGACCTC GCGATCCTAT CAGGTGCTCA 
    CGCCATAGGC AATTCACACT GCGTCTCCTT CGCCAAGCGG CTCTACAACT 
    TCACCGGCAA GGGCGACGCC GACCCGACGC TCGACCGGGC GTACGCCGCG 
    GCGGTCCTCC GCGCCGCCTG CCCGCCGCGG TTCGACAACG CGACCACCGT 
    CGAGATGGTG CCGGGGAGCT CGACGACGTT CGACACCGAC TACTACAGGC 
    TGGTGGCGAG CCGGAGGGGC CTCTTCCACT CCGACCAGGC GTTGCTCCAG 
    GACAGGGAGG CGGCGGCGAC GGTGCGCGTC ATGGCGAGGT CGAGCAGGCA 
    GGCGTTCTTC CGGCGATTCG GGGTGTCCAT GGTGAGGATG GGCAATGTCG 
    GGGTCCTGAC GGGAGCCGCA GGAGAGATCA GGAAGAACTG TGCTCTGATT 
    AATTGATGGG CAGAGATTTG ATCTTTGATA TAAGTTATTA CTAAGTCATG 
    TACTAATGAT GTTCTATTGT TTGGTGTCTA ATTAAGTTAT TACTACTACT 
    ACAAGGTAAA TTTCATGAGG G

    Gene models with high sequence identity

    1. AT4G11290.1 [+] show detail - Peroxidase superfamily protein
      E-value: 2e-66; Score: 249.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1e-62
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Plant peroxidase 6.5e-29
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-14
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-14
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.8e-14
    superfamily Haem peroxidase 9.3e-82
    Gene3D no description 3.7e-40
    ProfileScan Haem peroxidase, plant/fungal/bacterial 60.779
    PatternScan Peroxidases heam-ligand binding site 0

    See the detailed result >

    AT4G11290.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G05260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR