K30605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30605

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30605

Determination of introduced cDNA(s)

  • J023011G11 - Rice Full-length cDNAs - Original: J023011G11

    full reading [+] show sequence

    Nucleotide sequence: J023011G11 - full reading 
    GGCAAGCCTC ACTCTCCTCC TCCCCGCTTC GGATTCCACC GTCGCGGAGC 
    TCGGCGCGGG CGGAGATGGA GGGCGACGCC GCCGGAGCCG GTGGCGGCGA 
    CCGGTCGAGC ATCGTGATCG GCCTCATCGA GAACCGAGCC AAGGAGGTTG 
    GTGTTGCTGC TTTTGATTTG AGATCAGCCT CACTGCATCT TTCTCAGTAT 
    ATTGAGACCA GTTGCTCATA TCACAATACG AAGACACTTC TGCATTTCTA 
    TGATCCTATG GTTGCAATAG TGCCCCCAAA CAAAACAGCA GCAGACGGTA 
    TGGTTGGAGT TTCAGAGCTG GTTGGTAAAC ATTTGCCAAC AAATAAAAAG 
    ATAACAATGG CACGTGGCTG CTTTGATGAC ACAAAGGGTG CTGTTATGGT 
    AAAAAATCTT TCAGCTAGAG ACCCATCTGC ACTCGGTTTA GATACTTATT 
    GCAAGCAATA CTATCTTTGT CTTGCTGCTG CCTCTGCAAC AATTAAGTGG 
    ATTGAATCAG AAAGAGGTGT AATTATCACT AATCACTCAT TATCAGTTAC 
    ATTCAATGGG TCATTTGACC ACATGAACAT TGACTCAACT AGTGTACAAA 
    CATTGGAAAT TATTGACCCT TTTCATACTG AACTGTGGGG AACTAGCAAC 
    AAAAAGAAAA GTCTCTTTCA GATGTTGAAG ACTACAAAGA CTACAGGAGG 
    GACTAGACTA CTGAGAGCCA ACTTGTTGCA ACCGTTAAAA GACATTCAAA 
    CAATCAATAC TCGTCTGGAT TGCTTGGTAA GGAGATTAAT CTTTTTTGTT 
    ATTCTCAATT CTTAAATTGG AATGTCTGTT TGATCAAATT GGTCATACGG 
    TAATCCTGAC ATTTGAAACT TCCAAAGTTG CACATATTAA GTTCTGGATC 
    TTCTAGTAGG CTAGGTTCTG GATCTTCTGT GGGAATGAAC TAACTTCATG 
    GAGTATGAAC CCTGCTTTAT GCATGTGGAA ATCTTAGTGC ATATAGTCTT 
    AAATCGTTAC TCGAAGGGTT TACCACAATC ATGTTTGTAC CATTTATTGT 
    TCATTTCCTG TTGGAGCACT TTGCAATATA ATGGAGAATT TTACTGCAAC 
    CATGATTGTA CACCACAGGC CATATGTGAA AGTATTTCCA TGAGAAGGGG 
    AAGCAATAGT TCTTGTAATA TTGATATGCA ACGCTCCTTT GCAAGAATGA 
    AAGTCAACTG GAATCTGGGA TATAACAAGT ATTCAGTTAC TAATATTATC 
    ATCGAAAATG ATCAGTAATA TATCCAATAA ATGCATGTTT ATTAATTTTA 
    TATCTTAAAT TTTAGGATGA GCTAATGAGT AATGAGGAAT TATTCTTTGG 
    CTTGACACAA GGTCTTCGTA AGTTTCCAAA AGAATCAGAT AAAGTTCTTT 
    GCCACTTCTG CTTCAAACCC AAAAAGGATA CTGATGAAGT GCTAAAGCCT 
    GCCAATGGTA GAAAGAGCCA AGGGCTGATT TCTGACATTA TTGTTCTAAA 
    AACAGCTCTG GATGCCATAC CATTCCTCTC CAAGGTAGTG TTATAGATGT 
    GTTTGTCCTA GTATTCAATT TAGCAATTTA TTCATTCTGA TTTTTCATTT 
    TGTTTTGTTT TTGAAGATGC ATGTTATTTT GTTCATTTAA GGGTAAATGT 
    CCTTTATTCT AGAAACATAC CCATCTACCT TTTCACGCAT GTGATGTGTA 
    GCTCATCACA GGTTCTAAGG GGTGCAAAAA GTTTCCTTCT TCGCAACATT 
    TATCAGACTA TATGTGAAAA CCCAAAGTAT GCAAGCATGA GAAAGAGGTA 
    CTGTTTTCTG ACCTTTTTCC TCCCATTTCA AAGGAGAAGT TGAATGAAGA 
    CTGAAAACAG CATGCTAACT TCAGGCTTAG TCTTCCCATC CTGCTTTTGT 
    TTGTACATTT GTTTTTAGTT TTTAGTAATA TTGCGAGTAT ATTAGCATTA 
    TGTGACTGTA AATATGTTCG TCCACATTTA TTAAATAACA AGTATATCCA 
    TCTACATTCT AAAAGTAACC ATTCACCTTT GATTTGGTTG CATGTTTTCT 
    TTTATGATCC TAGAATTGGG GATGTCATTG ATGAAGATGT TGTTCATTCA 
    AGGGCTCCTT TTGTAACCTG CACTCAACAA TGTTTTGCTA TTAAGGCTGG 
    AATTGATGGA CTGCTTGATG TTGCTCGTAG ATCTTTCTGT GATACCAGCG 
    AAGCCATACA TAACCTTGCC AACAAGTACA GGGAGGATTT TAAGCTTCCA 
    AATTTGAAGA TACCATATAA CAACAGACTA GGATTTTATT TTATTGTACC 
    CCAGAAGGAC ATTACTGAAA GGCTCCCTAA TAAATTTATC CAGGTAGTTA 
    GACATGGGAA GAATGTCCAC TGCTCAAGCT TGGAGCTTGC TTCGCTAAAT 
    GCCAGGAATA AGTCTGCTGC TGCTGAGTGC TTCTTGCGCA CGGAACTTTG 
    TTTGGAAGGG CTTATTAATG AGATCAGAGA AGACATTGGT ATATTAACGT 
    TGCTTGCCGA AGTATTATGC CTGTTGGACA TGCTTGTAAA TTCTTTTGCG 
    TTTACAATAT CTACTAAGCC CGTTGATCGT TACACGAGAC CTGAATTCAC 
    TGATGATGGT CCGATGGCAA TTAATGCTGG AAGGCATCCT ATTCTTGAGA 
    GCTTGCATAA TGATTTTGTT CCTAACAATC TCTTTCTGTC TGAAGCATCT 
    AATATGGTTC TTGTCATGGG GCCAAACATG AGTGGGAAGA GCACATATCT 
    TCAACAGATT TGTCTAATAG TCATTCTTGC ACAAATTGGC TGTTATGTTC 
    CAGCTCAATT TGCATCACTA AGAGTGGTTG ATCGCGTATT CACACGGATT 
    GGCACTGGGG ACAATGTTGA AAATAACTCA AGCACATTCA TGACAGAAAT 
    GAAAGAGACA GCTTTCATTA TGCAGAATGT TTCTTCGAAG TACTATGGGT 
    CTACCATGCT GCAATAGATT GGATTGCTGT TTCTCTTGTT TCCTTGTAAT 
    GACCATGTGC ACATTTGCAC ACATTACAGG AGCCTGATTG TTGTGGATGA 
    GCTTGGAAGA GCTACGTCTT CCTCTGATGG GTTGGCAATT GCATGGAGCT 
    GCTGTGAATA TCTATTATCT ACCAAAGCCT ACACGGTGTT TGCCACGCAC 
    ATGGAGAGCT TGTCAGAACT TGCAACCATC TATCCAAACG TGAAGATCCT 
    CCATTTTGAA GTCGACCTGA GAAACGACCG CCTCGATTTC AAGTTCCGGT 
    TGAAGGATGG TGTCCGGAAA GTACCACACT ATGGTCTTTT GCTGGCAAAG 
    GTGGCTGGTC TCCCTTCTTC AGTGATCGAC ACTGCAGCAA GCATCACTTC 
    ACGGATCACA GAACAGGAAA TGGTGAGGAA GGACGACAAC TGCGAGCAGT 
    ACCGGTCGCT CCAGATGGCG TACCAGGTCA CGCAACGGCT CATCTGCTTG 
    AAGCAATCCA ACCAAGGCGA TGACTACATC CGGGAAGCGT TGCAGAATCT 
    CAAGGACGGC TATGCTGCAG GCCGCTTGAC ATGAGAAGAA AAATATATGT 
    AAAAAGGAGT TTTTGTTTCT CTCTCCTACA GCTGGCAGCA TGTATGGATT 
    ATGGTCGTAT GGATGTAGCC ATGTAGGGCA CCCC

    Gene models with high sequence identity

    1. AT4G17380.1 [+] show detail - MUTS-like protein 4
      E-value: 0; Score: 697.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 1.9e-31
    superfamily DNA mismatch repair protein MutS, core 8.1e-20
    superfamily P-loop containing nucleoside triphosphate hyd 3.6e-14
    superfamily DNA mismatch repair protein MutS, core 2.5e-12
    HMMPanther gb def: Hypothetical protein dl4725w (Hypothe 5.1e-05
    HMMPanther DNA mismatch repair protein MutS, C-terminal 5.1e-05
    HMMPanther gb def: Hypothetical protein dl4725w (Hypothe 1.5e-56
    HMMPanther DNA mismatch repair protein MutS, C-terminal 1.5e-56
    HMMPanther gb def: Hypothetical protein dl4725w (Hypothe 2.7e-06
    HMMPanther DNA mismatch repair protein MutS, C-terminal 2.7e-06
    HMMPanther IAP DOMAIN RELATED 0.00089
    HMMPanther INHIBITOR OF APOPTOSIS 0.00089
    HMMPanther MUTS HOMOLOG 4, MSH4 2.1e-86
    HMMPanther DNA mismatch repair protein MutS, C-terminal 2.1e-86
    Gene3D no description 4.4e-36
    Gene3D no description 5.9e-22
    Gene3D no description 1.4e-12
    HMMSmart DNA mismatch repair protein MutS, C-terminal 1.4e-09
    HMMSmart DNA mismatch repair protein MutS, C-terminal 1.9e-09
    HMMPfam DNA mismatch repair protein MutS, C-terminal 1.1e-45
    HMMPfam DNA mismatch repair protein MutS, clamp 1.9e-13
    HMMPfam DNA mismatch repair protein MutS, C-terminal 2.1e-29
    HMMPfam DNA mismatch repair protein MutS, core 2.6e-15

    See the detailed result >

    AT4G17380.1

    Model type
    Protein coding
    Short Description
    MUTS-like protein 4
    Curator Summary
    Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.
    Computational Description
    MUTS-like protein 4 (MSH4); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, synapsis, meiotic prophase I; LOCATED IN: condensed nuclear chromosome; EXPRESSED IN: flower, sporocyte; EXPRESSED DURING: petal differentiation and expansion stage, IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS, core (InterPro:IPR007696); BEST Arabidopsis thaliana protein match is: MUTS homolog 2 (TAIR:AT3G18524.1); Has 13303 Blast hits to 13154 proteins in 2712 species: Archae - 169; Bacteria - 9120; Metazoa - 661; Fungi - 837; Plants - 451; Viruses - 3; Other Eukaryotes - 2062 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR