K30620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30620

Determination of introduced cDNA(s)

  • J013163C09 - Rice Full-length cDNAs - Original: J013163C09

    full reading [+] show sequence

    Nucleotide sequence: J013163C09 - full reading 
    TCCTGCTCTT CCACCGCCTC TCCCCGGCCG GAGCTGGGAA GGGGAGGCGG 
    AACCCTAGCT CCGCCGCCCA CGAACCAACT CCGAAATTCG CCGCGTCCGA 
    TCCTCCTCCT CCGAAATTGA AGGTAGGAAT GGATTCCCCA TTCCCGCGCC 
    CCCCTTTCCC CTCTCCTCCC CAACCTCACG GCCCGCCGGA ATTCGCCGGC 
    CGCCGTTCTC GGCCGCCCCA GCTCAAGCCG CCACTACCTA CCTCTACTCA 
    GTGCTCGATC TTCCTCGCTG GAACCCGCCG GAGCGCCGCC GCCTCTCACG 
    CCACCGCCGG AATCGGCGTC CCCTCGCCGG TCCTGCTCCC CCTTCGCTGC 
    TGGCCACCGG CGGCCTTGAA CCGCTGACGA CCCCTGTAAA CCGAAGAAAA 
    ACGAAGCAGT CTCTTCCTTT TGAAATAAAA ATACAATTTC TCTGGTTCCT 
    CTGGTTCAGT GACCAACTGA CCATTCGAAA ATCTGCCACC TGTTCCCAAC 
    TCATTGAATT ATTATCCCGA GTCCATCCGC ACAAGTTTCG TCTCAATCCG 
    AGCATCCATT AACACAACCC CCAAATTTTG ATTCTTAGGG TTCGCTGACC 
    GTTAAAGCTA CAGAAATTTT CAAATTTCAC CATCTAACCT CTTTTGATCC 
    TAAACGGCAC CTTCCGAGGT TTTAGTGTTT ATTTGGATTT TATTTGCTTA 
    GCTCTTTAAT TGTGTATCGA TAGATTACGC CATCGGTTCA GGAGAAGGGT 
    CAGAGTTTGC TGTTGATGCA TACGCCATCG CTGCTGCAGG AGGAGACGTT 
    TGGTACGACT ACGCTGAGCC CAAAGGCAAG TCATCTCCCT TTATCATAAT 
    TTGAAGCCAA TTGTGCTTGC CTTGAAGTAC GTTTTAGGGT GCCTTGAAGC 
    ATACTTAAAA CCTTTCAAAA TGGCAATGAC CAGTTATCTC ATATTGCTAT 
    ATACAGCCAT GCCTTGTTGT TGAACCTGGT ATATCCTTGG TAACCCTTGT 
    ACAACATAAC ATGTGATGTT TACAGTTTAG TTATATCACT TCATGTGTTC 
    AGATGGAAAT GTTATGGTTC TTTTAAAGTT TATAAGGATA AACCCACTTA 
    TACTAATATT AAGTGGCATA GTTTACGCCC ATACGTTTGA CCGAGTAATT 
    AGACTTGAAT GAACACATTT CCAGTGGATT GAAATCCTAT ACTAGAATTT 
    CTTCTCTAAA AATGTTTGGA GTGGCGTCTC TCCCTCCAAA TCTCGTTTTT 
    TGAAATCCTG CACTAGGACC CCACAACCCG CTCGCTCTTG AAGTGAACCA 
    TATATCGGCT TGAGATTGTG CTGAGGCTCT TTTGTGTATG CCTTATGGTC 
    CTTACAGTGT ATTGGACCTA TTGCATCTTT TAGCTCGTCA AGGTGGTACA 
    TTAACTTCAA CTGAGAGTAT CGGAGTAGGT CCCCTACCCA TGGCATTGGG 
    TCTCCCGCAC GGTACGCGTT GGGGGCGTGA CCCCGTACAC GACGGAGATG 
    TTCACGGTGG CCTTCTTGAA CACGACCCAC CCTTCAGCAC GTGGCTGATG 
    CCCTTGCCGC TGCCCAGCCG TGTCTAGGCG TCCTCCTGGA ATTGCACCCT 
    GCTCCACATG CCTACCGCTG CTGGCCTCCT TGACCACCTC CAGCGCCGTG 
    CACACCTCCA CCTGCGCGTG CCGGATCGTG CGCTCGAATC GCGCCTGCAC 
    CAACGCGGCC TTCTCCTCTC CCAGCAGGAA TGTCAGCGGT ACCCTACGGC 
    CTGCGTGATG CAAGAGAGAA AGAGAGACAG ATTTAAACCA GCTCAGCCAA 
    TCCCCTCCCG CCACATGCTC CATGACTTAT TCTCTTCTAT CTACAGCTCG 
    CTGTGACCGG GAGCTCCGAG TTGGCCACTA GCAATGGCAT TGTCGGTGAG 
    TTTGGAGCTC TCGCACTCGC CTCCGCTGTG GCACCTTCCC TCCCTCTGCC 
    ATCACCGCCC AGGTATACCG GATCCAAGAA AATCGTGGAC AGTAAAGCAA 
    CCCAAGAGGA TCTGCAGCCG CAGTGTCAAA ACTGAAGAGC TGCAGAGATT 
    CAGTGGCCGG AACAACCACG GAGGAGGACG AGGGAGCCCT TGAGGCGCGG 
    CACGGTGAGT CCGCGCCTCC CTGTGCCCGA CCACATCCCT CTCCCTCCTT 
    ACGCCGGCAC GAATCGCCTC CCTGATGTTG ACCCCAATCG ACAGCTGCAT 
    GGCTGCGAGA GCATTGCTCG TATGAGAGCC GCCTGCGAGC TCACCGCTCG 
    AGTTCTTGAG TACGCAGGGA CACTAGTCAA GCCATTGGCG ACGACTGATG 
    AGATTGACAG AGCAGTTCAT CAGATGATCA TCGACGCTGG CGCCTACCCT 
    TCTCCCCTAG GCTACGGTGG TTTTCCGAAG AGCGTCTGCA CGTCGGTGAA 
    CGAGTGCATC TGCCATGGAA TCCCTGACTC ACGGGTGCTA CAGAATGGAG 
    ACATCATTAA TATCGATGTT ACTGTCTACT TGAATGGATA CCACGGTGAC 
    ACCTCAAGGA CATACCTATG TGGAGAAGTT GATGAATCTA CTATGCAACT 
    TGTAAAGGTG TAAATGACCT TGCTGATCTC TGCTGATTGT TTCATGATAC 
    GATAATGTTT CATCCTGTAT CTGAAGAAAC TTATATATTG TTCTGTAACT 
    AACATGCTGA GGGGAATATC AGCCTGCAAA CACGGTGCTA GTTTTAAGAC 
    AATTGGTCAG AGAATAAGGT GTTAATCTCT CTTACCCATA AATTTCATGA 
    TGTCTTTCAG ATGAATCAAG TACTAATCAG CATCGATCTG AAAGCACTGA 
    AAAAAGGAAC ACAAAAATTG ATCAGGATGC TGTTTTTCCC AGTAATAAGC 
    AAACATTTTC CTCTAAAATT TACTGAGAAA TTTTGTTTCA TGTACTTATA 
    TATGTAGTAT ATTATCTATC ATACATTTTT TCTGGTGCAC TGAAACTCAA 
    ATAAGCTGAA CAGTAAGTGG AAAAACATAT AATGCTGAAT TTCAAATGCC 
    ATGAATCATA AATGCACTTA TCCTGTCAGT GATAGTCCAG CTTCTACAAA 
    TAATTTCATG ATTTCTGATT TCAGTGAGTA CGTGGACGAG TACGGGTACA 
    GCATCGATCC CTTTGTCGGA CATGGAATTG GGAAAATATT CCACTCGGAA 
    CCGATCATTT GGCATACCTA TGATTATGAG CCAGGCTACA TGGTTGTAGG 
    CCAGACATTC ACAATTGAGC CTACTCTGTC CATGGGAGGC ACCCAGTGCA 
    CACTGTGGGA CGACGGGTGG ACGGCTGTCA CGGTGGACAG CAGCCTCACC 
    GCGCAGTTCG AGCACACCAT CTTGGTCACC GGCGACGGCG CGGAGATCCT 
    CACCATGCAC CCGCGGTGAG ATGACGAGAA ATTCTACGCA ACTAGCACCA 
    CTTGCATATC GTGCTGGTCT AAAAGCATCC TTTTCTCAGT TTTCATCTTT 
    CACAAAACAA AGGCAACTCA TGATCTGTAC AGCATTTTCA AATAGTAGCA 
    AAATGCCCAT ACTTTGTTAC GGGATTAAAA ACAAAATCTT ACTGTATGCT 
    CTAGAATAGT ACTTCCCGTT CAATAATTAT GGGATTATTA ATGTGACTGA 
    CTGGGGATTA GTAGAATCTT TTCAGAATCA TTTAGAGACT ATACTGCTAC 
    AATAATTGAG

    Gene models with high sequence identity

    1. AT1G13270.2 [+] show detail - methionine aminopeptidase 1B
      E-value: 1e-69; Score: 262.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Peptidase M24, methionine aminopeptidase 1.4e-10
    FPrintScan Peptidase M24, methionine aminopeptidase 1.4e-10
    superfamily Peptidase M24, structural domain 6.8e-24
    superfamily Peptidase M24, structural domain 4e-40
    HMMPanther Peptidase M24A, methionine aminopeptidase, subfamily 1 4.6e-31
    HMMPanther Peptidase M24, structural domain 4.6e-31
    HMMPanther Peptidase M24A, methionine aminopeptidase, subfamily 1 1.3e-42
    HMMPanther Peptidase M24, structural domain 1.3e-42
    Gene3D Peptidase M24, structural domain 9.7e-22
    Gene3D Peptidase M24, structural domain 1.8e-39
    HMMPfam Peptidase M24, structural domain 1.3e-08
    HMMPfam Peptidase M24, structural domain 1.8e-23

    See the detailed result >

    AT1G13270.2

    Model type
    Protein coding
    Short Description
    methionine aminopeptidase 1B
    Curator Summary
    Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C.
    Computational Description
    methionine aminopeptidase 1B (MAP1C); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein amino acid modification; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1C (TAIR:AT3G25740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR