K30625

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30625

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30625

Determination of introduced cDNA(s)

J023019N13 - Rice Full-length cDNAs - Original: J023019N13

full reading [+] show sequence

GAGCAGAGCA GCGCAAAACA GAGCAGACCA AGAGCAAGGA GACGACGACG 
ACGACGACGA TGCAATCCCT CCTCTCCTCC TCGGTGCTCG CCAACCCATG 
CACCACCGGC TCCCCGCTCT TCCCGCCGAC CGCTGCTAAG CTCGCCGCCG 
CTGCCTCGGT CCCGGTGGCC GCGGCGGCGA GGAGTGGCGC CATTGCTGCC 
GTGTCGAGGA GATCGGCCAG TGGCGGCCGG TGCGTGGTGG CGGCTGCGTC 
GTCGTCGTCC CCGGCGGTGA CCACGGCGGA GGCCGGCGAG GTGCCCGCGA 
CGATGAAGGC GTGGGCGTAC GACGATTACG GGGACGGCAG CGTGCTCAAG 
CTCAACGACG CCGCGGCGGT GCCGGACATC GCCGACGACC AGGTGCTGGT 
GCGCGTCGCC GCCGCCGCGC TCAACCCCGT CGACGCCAAG CGCCGCGCCG 
GCAAGTTCAA GGCCACCGAC TCCCCTCTCC CGACGGTGCC GGGGTACGAC 
GTGGCCGGCG TGGTGGTGAA GGCCGGGAGG AAGGTGAAGG GGCTGAAGGA 
AGGGGACGAG GTGTACGGCA ACATCAGCGA GAAGGCGCTG GAGGGGCCCA 
AGCAGTCGGG GTCGCTGGCG GAGTACACCG CCGTGGAGGA GAAGCTGCTG 
GCGCTCAAGC CCAAGAGCCT CGGCTTCGCG CAGGCCGCCG GGCTGCCGCT 
CGCCATCGAG ACCGCCCACG AGGGCCTCGA GCGCGCCGGC TTCTCCGCCG 
GCAAGTCCAT CCTCATCCTC GGCGGCGCCG GCGGCGTCGG CTCCCTCGCC 
ATCCAGCTGG CCAAGCACGT GTACGGCGCG TCCAAGGTGG CGGCGACGGC 
GAGCACGCCC AAGCTGGAGC TCCTCAAGAG CCTCGGCGCC GACGTCGCCA 
TCGACTACAC CAAGGAGAAC TTCGAGGACC TGCCGGACAA GTACGACGTC 
GTCCTCGACG CCGTCGGCCA GGGCGAGAAG GCCGTCAAGG TGGTGAAGGA 
AGGGGGCAGC GTGGTGGTGC TCACCGGCGC CGTCGTGCCG CCGGGGTTCC 
GGTTCGTGGT CACCTCCGAC GGGTCGGTGT TGGAGAAGCT CAACCCATAC 
CTGGAGTCCG GGAAGGTGAA GCCGCTGGTG GACCCCAAGG GGCCATTCGC 
CTTCTCACAG GTTGTGGAGG CCTTCTCCTA CCTCGAGACA GGGAGAGCCA 
CCGGGAAAGT TGTCATCTCA CCCATTCCAT GAGAGCTTGA CATCAATGGC 
AGAGCTTATG ATGGTCTCTC GCACCTGAGA TTCTGATTCT GAAGTGTGTC 
AGCATAGACC AAAATGAAGT TTATCTCATA TTACAGTTCA TAGAGTTACA 
CTGTTACACA AGTTGTATGC ACTGTGATGA ACTGCTGAGC AATGTCCACA 
ACCCCTCTCT AGCAATGTCC AGTTGATTTG AACAGGCAGG TGGTGCCCCG 
AATGTCCCAA TGTTACATGA GTTTTGCTAT GTAAGGGAAG GAACATCGAT 
ATACCGCGCC

Gene models with high sequence identity

AT1G23740.1 [+] show detail - Oxidoreductase, zinc-binding dehydrogenase family protein
E-value: 5e-123; Score: 438.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Polyketide synthase, enoylreductase	1.6e-13
superfamily	GroES-like	2.7e-35
superfamily	NAD(P)-binding domain	5.1e-26
HMMPfam	Alcohol dehydrogenase, zinc-binding	1e-15
HMMPfam	Alcohol dehydrogenase GroES-like	3.7e-10
Gene3D	no description	1.3e-34
HMMPanther	ALCOHOL DEHYDROGENASE, ZINC-CONTAINING	1.3e-96
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	1.3e-96
PatternScan	Quinone oxidoreductase/zeta-crystallin, conserved site	0

See the detailed result >

AT1G23740.1

Model type: Protein coding
Short Description: Oxidoreductase, zinc-binding dehydrogenase family protein
Computational Description: Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 40144 Blast hits to 39997 proteins in 2741 species: Archae - 622; Bacteria - 25898; Metazoa - 1494; Fungi - 3833; Plants - 1284; Viruses - 3; Other Eukaryotes - 7010 (source: NCBI BLink).
Link: InterPro Scan - TAIR