K30650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30650

Determination of introduced cDNA(s)

  • J033030N10 - Rice Full-length cDNAs - Original: J033030N10

    full reading [+] show sequence

    Nucleotide sequence: J033030N10 - full reading 
    GAAGACGAAC GTGCTTCGGT TACTTCGCCG GCGGAGTGGT GGTTGGCGGC 
    GGTGGGGGGC GGTGAGCCGG CGACGGTCGG CACCGCACGT CGAAGCGCCC 
    GGCGTCCGCG GTCTGCCGCT CCCGGTGGAG CTCGGCGAGG TGGCGGAGGC 
    GTTGCAGCCT AGGAGAGGAA GCGCTCGGTT GAGGCGGTGG ACGGCGGAGT 
    AGCGGCGGCC GTGGGGGCAG GTGCCGGCGC CACCGCCACC GCAGCCGGCT 
    TAGGCGGAAG AGACGGCGGG CCTAACCTGC TACTGTCCCG TCCCCTTACG 
    CGGTCACAAG CCATTGACGC CAAGCTGGTT CCCCTTGGCC CTTGCCACTT 
    CCACGCCGGC AGCAACATCC CTGCTACTTG AGGCCAGAAA TGTACACCTC 
    AGATGTTAGT GTTATGGCAT GGAGCATAAC TTGGAAAGTT AAGTGTTCAT 
    ATAACTACAT TTTTTTATAG GAACTCTCAT ATAATATCAT GAGCATTGCC 
    ACTATCTGAA AACGAGGCGA CAGTGTGAAA TTTTGCTTAC CAGGAGGCTC 
    AGCAAGGCGG AGGTACAGGT TCTCACCAAG GCTGGCCTTC TTCTCTGAGT 
    CGACAAGCTC CCCTGTCCAA ACCAAGCATC TTGACGGGTC AGCCATGGTG 
    CCGCCACTGC TCAAGTTGGC GTAAGCATAT GCCTTGCAAG AGCAGTTGCT 
    GCTGCACTCG GCCGCGCACT GGTCGAAGCT CCTGTTCCGG ATCTGCAAGA 
    ACTTGTCGGG GACCTTCATG TCAGGCAATG ACACGAAGCG GTGACCGCCC 
    TCTCCGCATC TCAGCTCTTC CTTTCTCCGG CATCCTGATT GCGAGATGCT 
    GGGATCTACA GGCTCGAACC CATCGAGGCA CCGGCACGCC GGGACGGCCC 
    CCGTGAAGTC GCAGTAGCCA AACGGGCCGC ACGAGCCATA GACCTCGCAG 
    CTGCCGGCGG CGGGGCGCTG GAAGATCAAC ATCCATGACG ACGAGCTGTT 
    GTCCCAGCTC AGGAACATCA TCGTGCCCGT GCTGTCAAGT GTGAGGCGTG 
    TGTAGATGGA GCTGTCGGAG ACAGTGTATG AGTAGTAGAG CTTGTTCCCT 
    GAGTCGATGA GTGTTTGATA CATGAATAAG CTGCTGTTAC TCGGATACTG 
    GGCGCCGGAC ACCGTCACGC TGGTTCTGAC GCCGTTACGG CAGTATGGCT 
    TGGTCCCGTT CCAGGTCATG CCCTGGAGGT CCGAGCTGGG GTCGAGGCTG 
    AAGGAGAAAT CTCCAGTGGA TGGGTCATCA TGGCTCCTCC ACGCAGTGAG 
    GCGTCCGATG ATCTCGGACT TGTAGCTCAT CAAGAACATC ATGCCTGCGA 
    GGATGGTATC AGTCGGGTGA TCGAAGCTTT GCCATATGTC GGTGCCGTTT 
    GGCAACCGGA GAACGAAGTT CCCCGTGTCG AGCAGCACGG CGGAGGCTCC 
    GGTGGCGCTG ATCTTGGTTG TCCAAAGAAT GTGGCCTTGG GAGTCCGACA 
    GCACCATGCC TGAGCTGTTG GTGATGGCAA GGGTCGCTGA CGAAGGGGTG 
    GTGATTGGGT TGTCGCGGTT GGCAACCCAC ACAACGGTGC GCTGGGGGAT 
    GTTGTGGAAC CAGACTCCAA CATAGAGGCT ATTGCTGAAG TTGGCCGGGG 
    GGAAGAAGCC GAGGGCAAAG ATGCCGCCCT TGGAGATGAG CATCTCGCTG 
    GGAAAGATTG GCTTTCCCAG TGTCAGCTGG TCATCGGTTT TGCATAGAGG 
    AATCGAGAGC AGCAGGAGGA ACATGAGAAA ATAGACCATA TTGCCTGTTA 
    GACTTTCTGC TTCGTTTGCT TGTCATGGGT CAAGTTATAT CTTTCATTCA 
    TAATGCAGAT ATGGACTGGT GTAGTTGGAG TTCAATTCCC TTGCTGTCAC 
    CTCATCTGAA GATCAGGAGA AATGTGAGAT GGCTAAGTCC TGATTCAGAC 
    TCATGGACAG AGACAGTAAA GGACCCTGTC TGAATTCTGA TGACCAGGTC 
    ACCTGGTCAT GATACTCCAA GTCGTGTGAC AATGCTGCAC GAAAACGAAA 
    GAATGCTGCT GCCATGGACT TTGGAGTGAT AGGCTAGTGC AGGCAAAAGC 
    GAAACCTCAC GTGCGTTCCA TGGCTCCACG TGGTGTCACA GGCCCTTGAT 
    GCTGCCACTC TCCATTTGAA GAAGTACAAT AGGGGAAGAA ATGGTGAGCA 
    TACCAGGAGA GTCGGCTAAC CGGAGGTATA GGTTGTCACC AAGGCTTGCC 
    CTCGCCATGT CAGCAAGATC CCCAGTCCAG AGCAAGCACC TTGACTGATC 
    GGACATGGTG TCGGCTTTGG TCAAGTTGCC ATAAGCATAA TCGTAGGCCA 
    TGCATGAGCA GTTGTGGCTG CACTTGGCCA TGCACTCCTC GAAGCTTCTG 
    TTCTGGACTT GCAAGAACTT GTCAGGGAGC TTCATTCCAG ACATGGTCAC 
    GAAATGGTTC CTACCTCCGC ATCCCAACTG TTGCTTTCTT CGACATCCTC 
    TCGAAGAGTT GAAATCACTT GGCTCGAATC CATCAAGGCA CTGGCATCTG 
    GGGATGGCCA ATGTGAAGTC GCAGTAGCCG AATGGGCCAC ATGAGGCGTA 
    GAGATTGCAG TCACCAGCGG CCGCTGGCTG TTGAGAGATG ACTGTCCAGG 
    ACGATGAGCT CCCGTTCCAA CTCAGGAACC TCATGTTGCC CATGTAGTCA 
    AGCTTGATTC GTGTGTATGG GGAGCCATCA GAGGTTGTGT ACATAATGTA 
    CAACTCATCC CTAGTGTTCA CAAGTGATTT GTACATCAAA GTGGCAATGT 
    TGCTCCCGTA TGCTTCACCG GACACTAACA CTCTATTAAG TGAAAGTGCA 
    ATGAAACGGT AATATGGCTT GGTCCCGTGC CAGATGAAGG CCTGAAGGTT 
    TGATCTGGGG TCGCTGTGGT AGGAGAAGTC CCCGGTGGAT GGGTCATTCG 
    GTCCCTTCCA AGCGACAAGT CGCATGGCGA CTTGTGCCTT GTATCTCAGG 
    AAAAACTTCT TGTTGGGGAG AAGGGTATCA GTTGGGTGAT CAAAGCTTTG 
    CCATGCGGTT GTATTGTCCG GCAGCCGAAG AACCAAGTTT CCTGAGTCTA 
    GCAGCACTGC ATAAGCTCGG TCACCTCTGG TGTTGATGTT GGCCATCGTC 
    GTTCAAAAGG TGTGGCCTTC TAAATCTGAC AATACAAAGT TAGAACTATT 
    GCTGATGGCG AGCATCGCAG ATGAAGGGGC AGTGATCGGC TTGTCACGGT 
    TGGCAATCCA AACGTATGTG CGCTCTGGGA TGTTGTTGTA CCATATGCCG 
    AGGAATAAGC TCTGGTTGGA AGTTGCTGGG GAGAAGAAGC CGAGTGCGAA 
    AACCCCGTTC TGGGAGACGA GCACGTCGCC AGGGTAGAGT TTCTTTGCTT 
    GTGTCAGCTG ATCATCGCAC TTGCAGAATG AGAAGATGAA AAGAGGGAAG 
    CAAGCCATAC CATTCATTTG GTCTTGTTCT TAGCTTTGCC TAGTTGCCTG 
    CAAAGCGTAG AGAAATAGCA CACACACATA TGGGTGTTTA ATTATCTGAT 
    GCATACATGA TTCTCCTGAG TCTTGACTCT TGACTCTTGA GGAGCACGCG 
    GTTGGACCAA AGGAAGCAGC GTAATAACGA ATGGCCGAGA CTATTCTGTC 
    CGTCGAGATA AAGTTTTGCT ACGAATTCAA ACTGAACTGT GGGGAGACTA 
    CGGTGAAGTG GCCTGACGAG AGCATAGGCG TAGCTGGTAT TAGTACTCAG 
    TGTTGTGATG CTAACTTGTG CAGTTTGTGG CTGGCTGGCT GGCTCGGTGG 
    CACCGGGACA ACCTCGCAAC TAGAAATATC GACGCTTGAA CGCTTGTGCA 
    CAACAGAAAA CTTACTACAA CTATTTCTGT AGACGACAAC ATGAAGGTTG 
    GAGGATCAAC GATTTATGCT CAAGAACAAT TGATGGAGAC TACTGAAGGA 
    TCAAGGAAGT TGTTTGCGTT ACGCAAGGAG ACGACAGGGA TTACCCCAAG 
    AGACTTTCCT TCTTTTTTTT TTGTAAACCA TTGAAAATGA ACCATACACC 
    CACAAAGCAA TCATATTCCT AGGTTCTTGC

    Gene models with high sequence identity

    1. AT1G65790.1 [+] show detail - receptor kinase 1
      E-value: 4e-59; Score: 227.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Curculin-like (mannose-binding) lectin 8.1e-30
    HMMSmart Apple-like 2.5e-08
    HMMSmart Curculin-like (mannose-binding) lectin 0.0028
    HMMSmart Apple-like 6.8e-09
    ProfileScan Curculin-like (mannose-binding) lectin 17.402
    ProfileScan Apple-like 10.419
    ProfileScan Curculin-like (mannose-binding) lectin 12.991
    ProfileScan Apple-like 10.651
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE-RELATED 7.6e-14
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7.6e-14
    HMMPanther RECEPTOR-LIKE PROTEIN KINASE-RELATED 3.6e-06
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.6e-06
    superfamily Curculin-like (mannose-binding) lectin 1.5e-29
    superfamily Curculin-like (mannose-binding) lectin 7.6e-11
    superfamily Curculin-like (mannose-binding) lectin 4.4e-16
    HMMPfam Curculin-like (mannose-binding) lectin 1.9e-28
    HMMPfam S-locus glycoprotein 7.2e-23
    HMMPfam PAN-2 domain 1.3e-21
    HMMPfam PAN-2 domain 6.5e-20
    HMMPfam S-locus glycoprotein 7.5e-19
    HMMPfam Curculin-like (mannose-binding) lectin 2e-15

    See the detailed result >

    AT1G65790.1

    Model type
    Protein coding
    Short Description
    receptor kinase 1
    Curator Summary
    An alternatively spliced gene that encodes a functional transmembrane receptor serine/threonine kinase, alternate form may not have transmembrane domain.
    Computational Description
    receptor kinase 1 (RK1); CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), S-locus receptor kinase, C-terminal (InterPro:IPR021820), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), S-locus, receptor kinase (InterPro:IPR022126); BEST Arabidopsis thaliana protein match is: receptor kinase 2 (TAIR:AT1G65800.1); Has 122289 Blast hits to 120537 proteins in 4566 species: Archae - 105; Bacteria - 13863; Metazoa - 44387; Fungi - 10421; Plants - 35006; Viruses - 434; Other Eukaryotes - 18073 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR