K30705

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30705

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30705

Determination of introduced cDNA(s)

  • J023081F24 - Rice Full-length cDNAs - Original: J023081F24

    full reading [+] show sequence

    Nucleotide sequence: J023081F24 - full reading 
    GACTCCGCTC CCCTCCTCTC CTCCTCCCTT CTCGCGGAGG CCGCCGCAAC 
    CAAAAAAAAA AAAGTCTAAC CCTAGATCCA GGCCCCGCGT CTCCGGCGAT 
    CTCCCGGCCA TGGCGACTCG CCGGGCCCTC TCCTCCCTCG TCCGCGCCGC 
    CTCCAGGCTC CGCGGGGCCT CGCCCGCCCC GCGCCCGCGC GGGCCGCTCC 
    ACCGACCGTC GCCATCGGGG TACCTCTTCA ACCGCGCCGC CGCGTACGCC 
    ACGGCCGCCG CGGCGAAGGA GGCGGCGCCT CCCGCGCCCG CGACGGGGAA 
    GGCCACGGGT GGAGGTAAGA TCACCGACGA GTTCACCGGC GCCGGCGCCG 
    TCGGGCAGGT GTGCCAGGTC ATCGGCGCCG TCGTCGACGT GCGGTTTGAC 
    GAGGGGCTGC CTCCCATCCT CACGGCGCTC GAGGTGCTCG ACCACAACAT 
    CCGCCTCGTG CTCGAGGTGG CGCAGCACCT TGGCGAGAAC ATGGTGCGCA 
    CCATCGCTAT GGACGGGACT GAGGGGCTTG TCCGCGGTCA GCGCGTCCTC 
    AACACCGGCT CCCCAATCAC TGTTCCTGTT GGCAGGGCCA CGCTTGGACG 
    TATCATGAAT GTTATTGGTG AGCCAATTGA TGAGAAGGGT GACATAACAA 
    CGAACCACTT CCTTCCCATC CATCGTGAGG CGCCTGCTTT TGTTGAGCAA 
    GCCACAGAAC AGCAAATTCT TGTTACTGGA ATTAAGGTTG TGGATCTGCT 
    TGCGCCCTAC CAAAGAGGTG GAAAGATCGG TCTTTTTGGT GGTGCAGGAG 
    TCGGCAAAAC TGTCCTTATT ATGGAGTTGA TCAACAATGT TGCTAAGGCC 
    CATGGTGGTT TCTCTGTGTT TGCTGGTGTT GGTGAACGTA CCCGTGAAGG 
    TAATGATCTT TACAGGGAAA TGATTGAAAG TGGTGTCATC AAGCTAGGTG 
    ACAAACAGAG TGAAAGCAAG TGTGCTCTTG TCTACGGGCA AATGAATGAG 
    CCCCCGGGTG CTCGTGCTCG TGTTGGGTTG ACCGGTTTGA CTGTTGCGGA 
    ACATTTCCGT GATGCCGAAG G

    Gene models with high sequence identity

    1. AT5G08690.1 [+] show detail - ATP synthase alpha/beta family protein
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.2e-26
    Gene3D no description 4.2e-49
    HMMPanther ATPase, F1 complex, beta subunit 1.4e-157
    HMMPanther ATP SYNTHASE 1.4e-157
    superfamily P-loop containing nucleoside triphosphate hyd 5.3e-49
    superfamily ATPase, F1/A1 complex, alpha/beta subunit, N-terminal 7.1e-30
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain 3.3e-25
    HMMPfam ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal 3.8e-22
    HMMPfam ATP synthase, F1 beta subunit 7e-11

    See the detailed result >

    AT5G08690.1

    Model type
    Protein coding
    Short Description
    ATP synthase alpha/beta family protein
    Curator Summary
    Encodes the mitochondrial ATP synthase beta-subunit. This subunit is encoded by a multigene family of three members (At5g08670, At5g08680, At5g08690) that shared 98% sequence identity at the amino acid level.
    Computational Description
    ATP synthase alpha/beta family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, poly(U) RNA binding, copper ion binding; INVOLVED IN: proton transport, ATP metabolic process, ATP synthesis coupled proton transport, ATP biosynthetic process; LOCATED IN: mitochondrion, nucleolus, mitochondrial respiratory chain complex I, chloroplast envelope, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1); EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seed development stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, F1 complex, beta subunit (InterPro:IPR005722), ATP synthase, F1 beta subunit (InterPro:IPR020971), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein (TAIR:AT5G08670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR