K30706

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K30706

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K30706

Determination of introduced cDNA(s)

  • J033048N17 - Rice Full-length cDNAs - Original: J033048N17

    full reading [+] show sequence

    Nucleotide sequence: J033048N17 - full reading 
    GGGTTCTTCC CCTCCCTTAT TCTCCCATCA CACTCTCCTC CTCTTCTTCC 
    TCCCTGGTTC CTAACTCCTC TACCCCACAT CATTCCAATC CTATCATGGT 
    GGTGGTAGAG AAATATAGAG AGAGCTAGAA GGGGAAGAGA AGAGAGAAGA 
    TTTCTAGCTT AATTAGAAGG GTTGTTACTA TGGGGGAGGT GAAGGAGAAT 
    GAGGTGGTAG AGATTTTTGA GCATGATCAT GACAACAAGA TCAGATCTCC 
    TGAAAACTCT GTGCCACCAG CCATGGTGCT GGACCTCAAC GAGGGCTTCG 
    GCGAGGGCAG CGAGGAAGGG GGAGTTGGCG AAGACGGAGA TGAAGAAGAC 
    GATGATGAGG ACGACGACGA CGACGACGAT GACGATGGCG GTAGCACAAG 
    CGAAGTTGCC GGAGGAGGGA GGAGCTCCAG CAACAACAGC AGCACCAACC 
    ACAATTCCGG GAGCGACAAG GACCATGACA TGAACAGCAG CAGCAGCAAG 
    GCCGACGGCG GCGGCGACAG GGTGCCGACG GTGCGGCAGT ACAACCGGTC 
    TAAGCTCCCC CGGCTCCGGT GGACGCCCGA CCTCCACATG GCGTTCGTCC 
    ACGCCGTCGA GAGGTTGGGC GGCCAAGAAA GAGCAACACC AAAGCTTGTG 
    CTTCAGATGA TGAATGTGAG GGGGCTCAGC ATTGCTCATG TCAAAAGCCA 
    TTTGCAGATG TACAGAAGCA AAAAGCTAGA CCACGAGTCT GGCCACGAGA 
    GAGGAGCCAT CTCATCAGTG TTTTCGCCCA TGGAGTTCCA CATGAGGAGA 
    GGGGACCATC GTTTCCACCA CCACGACATG TTCTTCCAGC GAGCCGCCGC 
    CGCTGGCGTC TCGCCGTTCT CCTCCAGGAT GCTGCACGAG AACGGCGGCG 
    GGTTCTTCGC TTCGAGGAAT CCCGGCTTGC CGGAGTCCAG CCGGCTCTAC 
    GGTCTCTTCC AACGCCGGCA GCAAGCTCCC ATGCAAAAAT TCGACTTCAA 
    GAACTGCAAT AGCTTCAGTA GGAACCAGGA GTGGGCGTTC AACCAGCAGC 
    ACGCGGCGGC GAGGGCCGCC GGCGCCGTCA ACGGCCACGG CCCGGCGAAA 
    GGGCTCATCC ACGAGATGAT CTTCCGGAAG GAAGGAAAGC CGACGTCGCA 
    TCTGTTCGAC GTGAGGGACG CCATCGCCTC CACCCGGGTG ACCTCGGCGA 
    CCACGGCCGC CGCCGCCGAC CACCGGCTAG ACGGCGCCGG GAAGGCCGGC 
    AACTTTGATT GGATCGGGAG CAGCTCCTCC CGGCCGCTCA CGAGGACAAT 
    GTCAGCGGCG GCGGCGGCTA CCATGGGCGA CCACCACCAT CTTCGGTGGC 
    GAGGCGGCGC CGCCGGCAGC GGGAACACGA CGGCGTCGTC GGATCCGGTG 
    GTCGCAAGCG AAGCTGCCCT AGGTTCCCTG CTCGAGAGGG CAAAGACGAA 
    AGCGACCGAG GCGATGCGCC TCGAGACGCC GGTGAAGATG ACGGCGGCGG 
    CGGTGGCGGC GGAGGAGATC AACGGCAGGA CGCCGGACTT GCAGCTGAGT 
    TTGAGCCCGA ACGCGGGAGA TCACAGATCA GCCGGCGAGA AGAGGAAGTT 
    CTTGAGTGAG CAGGAGGTGG ACAGTGACAA GCAGCAGCTG CCACTCACGC 
    TTTCCCTGTC GCTCCGGGGT GGTGGCGACA ATGGCGGCGG CGGCGGCGCA 
    GAAGCCGCCG GGAGGTTAGA GGAAGAGATG ACAGGTAGCA GCAGTAGCAA 
    GAAGGCCGCT CTGGGGCTGA GTACTTTGGA TCTGACCATG TCGATCAAGG 
    CATTGGAGTG AGATCTTTCA AGTACTTGTC CCAAGGCCTT CCAAGACATG 
    CACACTGCAC CATGAGATTA ATTATTAATA AGACTGTTAA TTTTGTTTAA 
    CCATGCTTCC AGACCATATA TAATACATAT ATATCTTATG TTC

    Gene models with high sequence identity

    1. AT2G38300.1 [+] show detail - myb-like HTH transcriptional regulator family protein
      E-value: 2e-29; Score: 127.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 9.8e-19
    HMMPfam Myb, DNA-binding 5.6e-13
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 12.601
    superfamily Homeodomain-like 1.2e-15
    HMMTigr Myb-like DNA-binding domain, SHAQKYF class 2.6e-26

    See the detailed result >

    AT2G38300.1

    Model type
    Protein coding
    Short Description
    myb-like HTH transcriptional regulator family protein
    Computational Description
    myb-like HTH transcriptional regulator family protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G40260.1); Has 1661 Blast hits to 1657 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 4; Plants - 1609; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR