K31003

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31003

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31003

Determination of introduced cDNA(s)

  • J023110O13 - Rice Full-length cDNAs - Original: J023110O13

    full reading [+] show sequence

    Nucleotide sequence: J023110O13 - full reading 
    GATTCCTCCT CCGATCTCTC GCTTTCCTTT CCCCACCACA GAGCCGCGCC 
    TCCGACGCGA TCACCCTAAA CTTCTCGATC TCCTCCTCCT ACGCCGCCGC 
    CGCCGCCGCC GACGACGACG ACGACGATGA CGTCCGACGC GTCGCCGCAG 
    CCCATCCAGA GCGCCAAGTC AGCCGTGGAG TCCCTCGCCG CCGTCCTCGG 
    TGCCGCGCTC CCGGGCACCC TCGCCTCGGC CGACGACCCC GCGAACGCGC 
    TCCTCCACGA CGCCGGCGTC GCCCGCGCCG TGGTGGGGCG CCTCCGCAGG 
    GAAGGGTCGG GCGCCGGGAA CGACGGGCTC TGCCGGTGGC TCTACGACGC 
    GTTCCAGTCG AACCTCCCGG AGATCCAGCT CGCCGTGCTC CGCTTCGTCC 
    CGGCCCTCGC CGGCGTGTAC ATGTCCCGCG CCGTCTCGAG GAAGCCGCTC 
    GCCGGGTTCG AGGCCGTGCT CCTGGCGCTG TACGCGCACG CCGCGGCGCA 
    GCGGGGCTCC GGGGAGGCCG AGACCGTGTC GCTGCCGAAC CTGGCCAACC 
    CCAGCGTGTA CCACGACGCG AAGGTGCCGC CCAAGACCAA GGCCGCCGAG 
    CTCGACGTCG CCGTGCTCTC CCCCGCTCTG GAGCCCCACG GCACCATGCG 
    CGCCACGCGC CGCGCCCGGA TTGTCGGCGC CGTGCTGGAG CTCTACCACG 
    GCAAGCTCGC CATCATGCCG CTCTCCTCCA AGATGGAATT CTGCGAGTTC 
    TGCGTCGCCT GGACCGGGAA CCGCAGCAAG CTGGACGACA AGCCGCGCGT 
    CGCGGCTGCC TCCGAGCCTG CCGCCGCCGA GGAGAAGTTG CGGAGGGTGC 
    CATTGCCATG GGAGCTGTTC CAGCCGGTGC TGCGGATCGT GGCACACTGC 
    CTGCTGGGCC CGACGAACTC CGACGAGCTG AAGACGCAGG CCACCCGCGC 
    CGCGGAGTGC ATGTACTGGA GAGCCGCGGA GACCATGGAC GCGCGCTCGG 
    TGCTCGCCAC CAGGAGCCTC GTCCGGCTGT CCCAGATGAC GGAGGAGCCG 
    ATCCCTGAGC CGTCCTTCTC CGGCGCCGTC GAGACGAACA TGGCGGAGCT 
    GGAGGCCATG AGGGCTAACA TCCTTAGCAA CAAGAACTGA ACTGAACTGA 
    ACGCAGTTGA ATTAGTCGTC AGGATTCAGG AATTTGATCA GACACTCACA 
    CTGCAACACG AATTACAAGT TAAGTTACAA CGCACACTGC AAGCCTGCAA 
    AAGTTAGCAG TGTTGGCGCT TTTGTTAGTC AGGTACCTAG CACAAGTCTT 
    CTCTCTAATG TGAGAAATTG AGAGATTGAT CAGTAGATGG TGTACAGGTC 
    TCTTCTCTCT GATGTGAGAA ACCGAGAGAT TGATCGGTAG ATGTC

    Gene models with high sequence identity

    1. AT5G21050.1 [+] show detail - LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CO...
      E-value: 4e-56; Score: 216.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Hyccin 5.1e-62
    HMMPfam Hyccin 2.1e-06
    FPrintScan PRICHEXTENSN 3.1e-10
    FPrintScan PRICHEXTENSN 3.1e-10
    FPrintScan PRICHEXTENSN 3.1e-10
    FPrintScan PRICHEXTENSN 3.1e-10
    FPrintScan PRICHEXTENSN 3.1e-10

    See the detailed result >

    AT5G21050.1

    Model type
    Protein coding
    Computational Description
    LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Hyccin (InterPro:IPR018619); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64090.1); Has 206 Blast hits to 206 proteins in 60 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR