K31035

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31035

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31035

Determination of introduced cDNA(s)

  • J013112B18 - Rice Full-length cDNAs - Original: J013112B18

    full reading [+] show sequence

    Nucleotide sequence: J013112B18 - full reading 
    GAATCACCCT TATCGTCTTT GGTTCCTTCT GCTTGCTTCT CTTGCTGGTT 
    CGTCGGTCGG TGGAGTTTGA GCCTGCGCCA TGGCTGTCGG CGGGAGAGGG 
    AGACGGCCGC TGCTCCTGCT CCTGCTCCTC CTCGCCGTGG CGCTGGCGCT 
    GGCGGCGCGC GCGCGGGCGC AGCTGTCGCC GGGGTTCTAC TCGGCGAGCT 
    GCCCCACCGT GCACGGCGTC GTGCGGCAGG TCATGTCGCA GGCCGTCATG 
    AACGACACGC GCGCCGGCGC CGCCGTCCTC CGCCTCTTCT ACCACGACTG 
    CTTCGTCGGC GGCTGCGACG CGTCGGTGCT CCTCGACGAC ACCCCCGCGG 
    CGCCCGGCGA GAAGGGCGTC GGCCCCAACG CCGTCGGCTC GACGACCGTC 
    TTCGACCTCG TCGACACCAT CAAGGCCCAG GTCGAGGCCG TCTGCCCCGC 
    CACCGTCTCC TGCGCCGACG TCCTCGCCAT CGCCGCGCGC GACAGCGTCA 
    ACCTGCTCGG CGGGCCGAGC TGGGCGGTGC CGCTCGGCCG CCGCGACGCG 
    CTGTCGCCGA GTCGGAGCGC GGTGTCGACC GACCTCCCGG GCCCCGAGGC 
    CGACATCTCC GCGCTCGTCT CCGCCTTCGC CGCCAAGGGC CTGAGCTCGC 
    GCGACCTCGC CGCGCTGTCC GGCGCGCACA CCGTCGGCCG CGCCAGCTGC 
    GTCAACTTCC GCACCCGCGT CTACTGCGAC GCCAACGTGA GCCCGGCGTT 
    CGCGTCGCAC CAGCGGCAGT CCTGCCCGGC GTCCGGCGGC GACGCCGCGC 
    TGGCGCCGCT GGACTCCCTG ACCCCCGACG CGTTCGACAA CGGCTACTAC 
    CGCAACCTCG TCGCCGGCGC CGGGCTGCTG CACTCCGACC AGGAGCTGTT 
    CAACAACGGG CCGGTGGACT CGGTGGTGCA GCTGTACAGC TCCAACGCCG 
    CCGCCTTCTC GTCGGACTTC GCCGCGTCCA TGATCAGGCT CGGGAACATC 
    GGCCCGTTGA CCGGGTCAAC CGGCGAGGTC AGGCTCAACT GCAGGAAAGT 
    GAATTCCTGA TCGATACTAC TAGATAGCAT TGCCGCGCGC AAATTGTTCA 
    TAGTACAAAG TTTAAAGTTA TATAATCAGC TGTCAATTTC ATGTATTAAG 
    TGAATTATGA CATAAGAATG CAATAGAAAT GTCCCAATTT TAGACATCAA 
    TCACTAGTGG ATAATTCTTC CGTTTGTTCG

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 1e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 73.321
    superfamily Haem peroxidase 1.5e-105
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Plant peroxidase 4.9e-62
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-32
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-32
    HMMPfam Haem peroxidase, plant/fungal/bacterial 8.2e-73
    Gene3D no description 1.7e-55
    PatternScan Peroxidases heam-ligand binding site 0

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR