K31132

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low saturation (PATO:0000328) (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31132

Determination of introduced cDNA(s)

J013075C24 - Rice Full-length cDNAs - Original: J013075C24

full reading [+] show sequence

GAATTTCCTG GACATGAAGC TGCAATGGCA GCATGTCTGG TCGTAGTCAA 
CTAGCCAGCC ACCAAAGAGA GAGCTATCAT CCATGGCCGC CGTGGCGGCG 
GCCGAGAAGG CGGTGAGGTG CCTCGGCCGC GGCTTCGACA TGGCCGGCGA 
CCTGAGGCTC AAGTACTGCA AGGGCGGCGG CGCCGGCTGC CTGGTCGCGA 
GGCGCGGCGA GACGACGCCG CTCACCGTGC CGGGAGTCGG GGTGATCGCC 
GACGTGCCGG CCGACGTGAG GTGCGACAAG GGCGACCGCG TCCGGTTCAA 
GTCCGACGTG CTCGAGTTCA ACAAGATGTC GGAGCTGTTC AACCAGAGGA 
GTTCGGTGGA AGGGAAGATC CCGTCGGGGC AGTTCAACGC GTCATTCGAC 
CTGGACAGCG GGTCGTGGGC CCACGACGCG CCGCACACCA GGTGCCTCGC 
TATGGACGGG TACTTCATCT CCCTCTTTGA CCTCCGTCTC GACCACCGCC 
ACCTCGCCCT CGATGCAGGT GTCCTCGCCG ACGTGCCACC CGCCTGGGAC 
CCCTCTGCCA TCGCAAGATT CATCGAGAAG TATGGGACGC ATGTGATCGT 
GGGGCTGAGC ATGGGCGGCC AGGACGTCGT CTACGTGAAG CAGGATAAGT 
CGTCTTCTCT GTCGCCGTCG GAGATCAAGG AGCATCTTGA CAGGCTCGGC 
GATCAGCTCT TCACCGGGAC ATGCGCCATG CCACCTCTGC ACTGCAGGTC 
CAAGGACAAG TTCAAGATAC CGGAGGCCTT CAACGTGTTC GATGCACAAG 
TAGCTCAGCA GAGGCTTCAC GGGATCACCA CTCTTGTATC AAGCAAGGAG 
GGTGTGACGG TGATATACTC CAAGAGGGGA GGGAACACGA CGGTGAGCAG 
CCACTCGGAG TGGCTCCTGA CCGTGCCGGC GATGCCCGAC GTGATCAACG 
TCAAGCTCGT CCCCATCACC TCCCTCATCA GGGGCGTGCC TGGCACTGGC 
TTCCTCTCTC ACGCCATCAA CCTCTACCTC AGATATAAGC CTCCTGTCGC 
TGACCTGAGG TACTTCCTGG ATTTCCAGCA TCACTGCGTG TGGGCCCCGG 
TGCTCGGCGA GCTGCCTCTG GGCCCTTGCT CACACCGGCA AGGCTCCAGC 
CCGGCGCTGC ATTTCAGCCT GCTGGGCTCC AAGCTCTATG TCAGCTCAAC 
TGAGGTGGTT GTTCCGAAGC TGCCGGTTAC TGGCATGAGG CTGCATCTAG 
AGGGCAAGAA AAACAACCGG CTGGGCATCC ACCTGCAGCA CCTGTCGACG 
ACGCCGACGT TCGTCGCCGC CGCCAGGGCC GACAAGCCGC CGGTGTGGCG 
TGGCACGGAG GCGGTCACCG ACGACCGGTA CTACGAGCCG GTGCAGTGGC 
GGATGCTGGC GCGCGTCTGC ACCGCGCCGG TGAAGTACGA CCCGCGGTGG 
TGCGCCGGCG ACCGCCGCCG CCGCCCCGCC GCCTGCGTCG TCGCCGGCGC 
GCAGCTCCAC GTCGTGGCGC ACGACGCCGC CAACAACGTG CTCCACCTCA 
GGCTGCTCTA CTCCCAGCTC CCCGGCTACG CCGTCGTGCA GTCCAAGTGG 
GCGCGCGGCG CGGCGCGGCC GCCGTCGGGG AGGTCGTCGA GTTTCCTGTC 
CATACCCTTC TCGGGGTCGC CGTCGACATC CAGTGGCGCC GCCGAGAAGG 
GAGGCCGGCC GGAGCAGGGC GCCTCGCTGG TGGGCGTCGC CAACGTCAAC 
TCCGGCGTGT TCGCCGGCGG GCCGCCGGTG CCCGTCGGCG CGCAGAAGCT 
GCTCAAGTTC GTGGACACGT CGCAGGTGAC CATGGGACCG CAGGATAGCC 
CCGGTTACTG GCTCGTCACC GGCGCAAGGC TGGACGTCGA CAAGGGGAAG 
ATCATGCTGC ATGTCAAGTT CTCACTGCTA GCCCAAGTTT CTTGACGACG 
AGTCGACGAG GGTGTCAAGA TGTTCATGAC CATCCCGTGA TCCAGAGTTT 
GTACAGTTTT CAGCTGCCAA ATGCAGATAT GCTAACAACT GAAAAAACAG 
AATATTCCAA AAAATTTGAT TTTTGATTTT TTTTTTTTGG TTTGGACCCT 
GAAGATGTTG CAACGATCTG TAAATGAAAA AAGATAGTAG GAACCAGAGG 
TATCATTCTA ACACTGC

Gene models with high sequence identity

AT1G14780.1 [+] show detail - MAC/Perforin domain-containing protein
E-value: 7e-149; Score: 525.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Membrane attack complex component/perforin (MACPF) domain, metazoa	3.1e-11
ProfileScan	Membrane attack complex component/perforin (MACPF) domain	20.861
HMMPfam	Membrane attack complex component/perforin (MACPF) domain	2.7e-28
Coil	coiled-coil	0

See the detailed result >

AT1G14780.1

Model type: Protein coding
Short Description: MAC/Perforin domain-containing protein
Computational Description: MAC/Perforin domain-containing protein; CONTAINS InterPro DOMAIN/s: Membrane attack complex component/perforin (MACPF) domain (InterPro:IPR020864); BEST Arabidopsis thaliana protein match is: MAC/Perforin domain-containing protein (TAIR:AT4G24290.2); Has 221 Blast hits to 220 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR