K31247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31247

Determination of introduced cDNA(s)

  • J033128E13 - Rice Full-length cDNAs - Original: J033128E13

    full reading [+] show sequence

    Nucleotide sequence: J033128E13 - full reading 
    GGCCCGTCGT CCCCCTCCCC TCTCCACTCC AACTTGAGCT CTAGCTCTCG 
    CACTCGCAAG CAAGGGAAAG CGAGGCGGAA GGAAGCTATC GCCTAGCAGC 
    GGAGACCGGG AGATCGAGAT GTCGGCGGGG CTCGTGACGG AGGAGGTGAT 
    GGTGGGGCGG CTGGTGCGGA TCCGGCGGAC GGTGATGCAG ATGCTGCGGG 
    ACAGAGGGTA CCTGGTGGTG GAGCACGAGC TCGCCATGGG CCGCCGCGAC 
    TTCCTCCGCA AGTACGGCGA GTCCTTCCAC CGCGAGGACC TCCTCATCAA 
    CAAGTACAAG AAGAACGATC CCTCCGACCA GATATACGTT TTCTTCCCTA 
    ACGATGACAA GGTGGGAATG AAACACATAA AGAAGTACGT CGAGATGATG 
    AAAGCTGAGA ACGTCTCCAG AGCGGTATTG GTTCTTCAAC AGAACCTCAC 
    TCCATTTGCA AGGTCATTTC TTCAAGAATT AGAGCCAAAG ATCCACTTGG 
    AAATTTTCCA GGAAGCCGAA TTGCTTATAA ATATCAAGGA ACATGTTCTC 
    GTTCCTGAAC ATCAAGTGCT TAACAATGAG GAAAAGAAGA CATTATTGGA 
    GCGGTACACT CTAAAGGAAA CTCAGCTTCC AAGAATACAA ATTACGGACC 
    CTATTGCAAG GTACTATGGC CTCAGACGAG GACAGGTTGT GAAGATCATC 
    AGGCCCAGCG AGACAGCCGG CAGATATGTT ACATATCGTT ATGTTGTATA 
    ATAGCAGAAA AATGAGATGG AGAGCACCAT AAATCTGGTG ATTTTTGCAG 
    GTATACATAC ATGACCATAT GCTTGGAGAA ATCATATTTC TAAGGAGAAG 
    CCATGTTAAT GATCCCATGG CTGTTATGTA AGTGAATTCT CGTGAGTTAA 
    GCATATGGAC CATACATAAT TCCTCATGTT GTACACTTTG TTTCAAGAAC 
    TGTATAAACA GTACAGAATA AAAACACCAG TTTTCG

    Gene models with high sequence identity

    1. AT3G22320.1 [+] show detail - Eukaryotic rpb5 RNA polymerase subunit family protein
      E-value: 8e-74; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA polymerase, subunit H/Rpb5 C-terminal 7.2e-38
    HMMPfam RNA polymerase, Rpb5, N-terminal 2.1e-27
    HMMPanther DNA-DIRECTED RNA POLYMERASE II 1.1e-85
    PatternScan RNA polymerase, subunit H/Rpb5, conserved site 0
    superfamily RNA polymerase, Rpb5, N-terminal 1.8e-39
    superfamily RNA polymerase, subunit H/Rpb5 C-terminal 1.2e-31
    Gene3D RNA polymerase, Rpb5, N-terminal 2.4e-39
    Gene3D RNA polymerase, subunit H/Rpb5 C-terminal 3.1e-28
    BlastProDom RNA polymerase, subunit H/Rpb5 C-terminal 2e-31
    HMMPIR DNA-directed RNA polymerase, RPB5 subunit 2.5e-112

    See the detailed result >

    AT3G22320.1

    Model type
    Protein coding
    Short Description
    Eukaryotic rpb5 RNA polymerase subunit family protein
    Curator Summary
    Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
    Computational Description
    NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR