K31311

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31311

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31311

Determination of introduced cDNA(s)

  • J023012N17 - Rice Full-length cDNAs - Original: J023012N17

    full reading [+] show sequence

    Nucleotide sequence: J023012N17 - full reading
    GCAAATTAAA GAAAGCATAC TAAGCTTAGT GTGTGTTGAA TCGGCGACGA 
    AGATGTCGTC GTCGGCGACG GTCCACTACC GCGCCGACGG CAGCGTGGAG
    ACGGCGGCGG TGGAGCCGCT GTACCCGATG GCGACGGTGG TGTACTTCCA
    GTGCGTGTTC GCCGCCATCA CCCTCATCCT CGTCGCCGGC TCCCTCCTCG
    GCCGCATGAG CTTCCTCGCC TGGATGATCT TCGTCCCGCT CTGGCTCACC
    TTCTCCTACA CCGTCGGCGC CTTCTCCCTC TGGGGCGGCG GCTTCCTCTT
    CCACTGGGGC GTCATCGACT ACTGCGGCGG CTACGTCATC CACGTCTCCG
    CCGGCATCGC CGGCTTCACC GCCGCCTACT GGGTGGGGCC AAGGGCACAG
    AAGGACAGGG AGAGGTTCCC GCCGAACAAC ATACTGTTCA CGCTGACGGG
    GGCAGGGTTA CTATGGATGG GGTGGGCAGG GTTCAACGGC GGTGGTCCGT
    ACGCCGCCAA CTCCGTCGCC TCCATGGCCG TCCTCAACAC CAACATCTGC
    ACCGCCATGA GCCTCATCGT CTGGACATGC CTCGACGTCA TCTTCTTCAA
    GAAGCCCTCC GTCGTCGGCG CCGTCCAGGG CATGATCACC GGCCTCGTCT
    GCATCACCCC CGCTGCAGGG GTGGTGCAGG GGTGGGCGGC GCTGGTGATG
    GGGGTGCTCG CCGGCAGCAT CCCGTGGTAC ACCATGATGA TCCTCCACAA
    GCGCTCCAAG ATCCTGCAGC GCGTCGACGA CACCCTCGGC GTCTTCCACA
    CCCACGGCGT CGCCGGCCTC CTCGGCGGCC TCCTCACCGG CCTCTTCGCC
    GAGCCCACCC TCTGCAACCT CTTCCTCCCC GTCGCCGACT CCCGGGGCGC
    CTTCTACGGC GGCGCCGGCG GCGCCCAGTT CGGCAAGCAG ATCGCCGGTG
    GCCTCTTCGT CGTCGCCTGG AACGTCGCCG TCACCTCCCT CATCTGCCTC
    GCCATCAACC TCCTCGTCCC GCTCCGCATG CCCGACGACA AGCTCGAGGT
    CGGCGACGAC GCCGTCCACG GCGAGGAGGC CTACGCGCTC TGGGGCGACG
    GCGAGATGTA CGACGTCACC AAGCACGGCT CCGACGCCGC CGTTGCGCCC
    GTCGTCGTAT GATCGATGAC ATTGCATGTG CTGTCACCTG ATGAAAACCT
    CAAGAAATTC ATACACACAG AAATTAATAC TACGTGTTTG CTTCTACTCG
    TTAATTATGA AAATCTATGT TCAAGTTTTA CGTGTATTTA ACAGCGCGCG
    TGTGGAGTTT TTAGGTATTG CACTTTGCAG ATTCAGGGGA GTCCGGTTCT
    GTATTTTTGT TAGTTTGTAA AAATACATAC GTAGTTTTGT ATCCTTACTT
    GATCTGAATG AACACAAGTG TAATATTGTA TTTTGTTAAT T

    Gene models with high sequence identity

    1. AT2G38290.1 [+] show detail - ammonium transporter 2
      E-value: 1e-126; Score: 450.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ammonium transporter 3.7e-73
    superfamily Ammonium transporter 1.2e-81
    FPrintScan Blood group Rhesus C/E/D polypeptide 7.3e-09
    FPrintScan Blood group Rhesus C/E/D polypeptide 7.3e-09
    FPrintScan Blood group Rhesus C/E/D polypeptide 7.3e-09
    FPrintScan Blood group Rhesus C/E/D polypeptide 7.3e-09
    FPrintScan Blood group Rhesus C/E/D polypeptide 7.3e-09
    HMMPanther AMMONIUM TRANSPORTER 2 5.9e-207
    HMMPanther Ammonium transporter 5.9e-207

    See the detailed result >

    AT2G38290.1

    Model type
    Protein coding
    Short Description
    ammonium transporter 2
    Curator Summary
    encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.
    Computational Description
    ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;1 (TAIR:AT4G13510.1); Has 10296 Blast hits to 10279 proteins in 2052 species: Archae - 227; Bacteria - 4609; Metazoa - 555; Fungi - 427; Plants - 543; Viruses - 0; Other Eukaryotes - 3935 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR