K31504

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31504

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31504

Determination of introduced cDNA(s)

  • J023109G22 - Rice Full-length cDNAs - Original: J023109G22

    full reading [+] show sequence

    Nucleotide sequence: J023109G22 - full reading 
    GAGACAAATC CATTGCTGGG AAGTGAAGAA GATGAAGGAG AGGGAGAAGG 
    TGGTGCGACT GGCCAAGCTC GCCGAGCAGG CGGAGAGATA CGACGATATG 
    GTGGAATTTA TGAAGACACT TGCTAGGATG GATGTGGATA TGAGTGCTGA 
    AGAGAGGCTT TTATTTTCAG TTGGTTTTAA GAAAACTATT GGTGCCAGGA 
    GAGCATCATG GAGAATCCTT GAATCACTTG AGCAGAAGGT GACAGCTGGT 
    GACCAACCAG GTGTAACAAT AAATGGCTAC AAAAAGAAAG TAGAGGATGA 
    ACTAAGGGCA GTTTGCAATG AAGTATTATC AATTATTGCT ATTCATTGCC 
    TTCCATTGGC CAATTCGGGT GAAAATGTCG TGTTCTTTTA TAAGATGTAT 
    GTGCAGGTTC ATCAAGTCAA TTATTTGCTT CTCAATTGTG TTTTACTTCA 
    TATCGGTCTA TTTCCTAATG GTTACATTCA GAATTTATTC CCAAACAAAC 
    ATCTTATTAT TATCCAGGCA TATTTTGATG ATGCAATCTT TTTCTTTGTA 
    GAAGAATACA CAACTTTGAG CTCATGTAGT GTTTTGAATA GCATTGACAT 
    AACACATCCA TATGAGTTTC TGACTTTCTG CTAAATTCTC TTCCTAAGAA 
    ATGCTTGACT GAACACCTTG GTCCAAAGAA TTGCAGAAGG TGACAAACAT 
    GTTGACTTTG CTCTGCTTTA AACTTTGACA TCAACCAGGT TTTACCAAAT 
    GATGCTAAGG TTTCATAGAA TCAAAGATTT AAACATACCA GCCATGACTC 
    ATGTGTCATT CCTCCAGGGA CTAACTATGC TGACCTTTTT TGCTCACAGT 
    ATCCAAAAAC TTATAGGTAA CCTCATGACA TATAGTTTTG CTCACATGGT 
    CCTAAAGTTT CAGAATAAAG ACTAAATTAT CATAATTTAA AGGGCAGTAT 
    GATACATATA TATACTGATA AATAAAGGGA AGGCTTCTAA ATAAGCAAGG 
    AGTTGAAGAG CTGATCTGTG CCAGCACATT AGCTTAACTT GTTTATTTAT 
    CTAATTCTGC ACAGAAATGC AAGTACTTTT TTTTTCTTTA GTGCACGACC 
    ATTTGTAGTG TTGGGGTATT CTTCAGAAAA GGAAAGGGAA ACAAGACCTA 
    AAGATGAGAT GAACCTCTTG ATTCCCCAAC TGTTTTCTTA GTCTTGGTCT 
    TTAATTAAAT CATGTTACAC CTGGATTGTT CTACATTTTA GCCTATACCT 
    GAGCATAGTT TCTTATGAAG CTTTGCTAAG TTGTTTTTCC ATAATAATAC 
    CTTCTGGTGA AAGTTTCCAT AATAATTAAA GTTTCAATAA TTATTTACTA 
    AGCTTTTGGA TTACTCAATT ATCTTTTCCA TCATTGTTTT TCAAGTATTA 
    ACAATGAAAA AAAAAACTGA ATAGTGCCTC ACTAGTTCTG AAGTTTCCCC 
    TCAGTACCTC TTGTTTCAGA TATTTTGAGA TTTTCTGAGA TGAGATGTTA 
    TAAGATTATA CTAGGATCTT ATGTGTTGCC CTGGTAATCT ATTTAACAAT 
    GGGCAGGTTG GTTTTCTATC AATTAACCGA GGATCTTCCC TCTATAGTAT 
    GTGCATGTTC GCACGATACT CATGTGTATA TCTTTTTTCT TTAATCTGCT 
    TTATACATCA CTCTTAAAAA AATTACAGGA AGGGTGACTA CTACCGTTAC 
    TTGGCTGAAT TTAGCACTGG AACTGAAAAG AAGGCTGCTA CTGATCAGTC 
    CCTTATGGCC TATCAGCACG CCATGGTTGT TGCCTCCAGT GAGCTTTCTC 
    CTGCCCATCA ATTCAGGCTT GGCCTTGCGC TCAACTTTTC AGTCTTCTTG 
    AGATAATGAA CTCTCCTGAG AGAGCTAGCC AAGTGGCAAA ACAAGCACTT 
    GATGAGGCTA CTGCTGAGAT TAACTCTGCT GGTGTGGAGG GTTACAAGGA 
    CAGCATGCTT ATGATGCAGC TCCTGAAGGA GAACCTGGCA TTGTGGACAT 
    CAGAACTAAC TGGAGGTGAA ACATCTAAGG ACGATGATGT TGTTATGGAG 
    GGCTAACTGT CTGAAATGTT CTAAAGGCCC CAGCATGTGA GCAAAACAAT 
    CAGTAACATT GTAACAATAC TGCTACTGAA CTTGCGACAT TTATCATGGG 
    AGCCGTGGAA ATCACCTTTA TTTTTCCCTT TCTTCTGTAG TTTCTTTTTT 
    TTGGCCCTCG CTTGGGTCTT GGTGTGACTC CCAAAGTATT TTCAGAGTTT 
    GGATTTGATA ACCATGCACC AGCTTTGGTT ATATTTTGAG ATCTTGGAGT 
    GGTCACCAAC CCAGCTTTAA TATTAGTTTG AGAGTACTTT TTTTTTCCAA 
    TGCTTGTTAA GCATCTTTGT ATACCAACGG GATGATGAAC TATATATCTC 
    TTAATGATGA CGAAATAAAC GTCTCTTTTG TTAAGATG

    Gene models with high sequence identity

    1. AT1G22300.2 [+] show detail - general regulatory factor 10
      E-value: 1e-30; Score: 74.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 14-3-3 protein 8.1e-20
    HMMPanther 14-3-3 protein 5.20000089003336e-26
    superfamily 14-3-3 protein 8.40001703163684e-17
    Gene3D 14-3-3 protein 5.40000570248859e-14
    HMMPIR 14-3-3 protein 4.5e-17
    HMMPanther 14-3-3 protein 1.7e-47
    HMMPanther 14-3-3 protein 1.7e-19
    Gene3D 14-3-3 protein 2.2e-36
    Gene3D 14-3-3 protein 1.7e-15
    FPrintScan 14-3-3 protein 8.9e-16
    FPrintScan 14-3-3 protein 8.9e-16
    FPrintScan 14-3-3 protein 2.1e-15
    FPrintScan 14-3-3 protein 2.1e-15
    HMMPfam 14-3-3 protein 5e-39
    HMMPfam 14-3-3 protein 2.3e-17
    HMMSmart 14-3-3 protein 1.3e-08
    superfamily 14-3-3 protein 8.2e-34
    superfamily 14-3-3 protein 3.4e-14

    See the detailed result >

    AT1G22300.2

    Model type
    Protein coding
    Short Description
    general regulatory factor 10
    Curator Summary
    Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.
    Computational Description
    general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.1); Has 2707 Blast hits to 2699 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR