K31532

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31532

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31532

Determination of introduced cDNA(s)

  • J013044E03 - Rice Full-length cDNAs - Original: J013044E03

    full reading [+] show sequence

    Nucleotide sequence: J013044E03 - full reading 
    GGCTCGCTCC GCGCCTCTCT CTCCCCGCTC GCGTCCTCGC TCTGCGCCTC 
    CTCTCCTCGC GACGGTCCAC CGCCGGACCA GCGACCTCGC CTCCTCGCTC 
    CGCCTCAATG CCGGACCAGC GCCGAGGCAC TACCGCACTG CTGCCCACGG 
    CCAGGCACGG TCCAGCCGCC TCTGACCGGC ACCACAGCGC CTCCGCTGCT 
    CGCAGGGACG CCGCCGCTAC CCGCCCGGCT ACCTCCGTTG CCGCCGCCAA 
    CACGCTAGTC TCCTCCTCCC TGATCGAGAT CGAGTCGACA CATACACCAC 
    CAACCACCGG CCGGCCGCCG CGCACCGGCG AGCAGGATGG GGAGGCCGCC 
    GTGCTGCGAC AAGGTTGGGT GAAGAAGGGG CCATGGACGC CGGAGGAGGA 
    CCTGATGCTG GCCTCCTACA TCCAGGAGCA CGGCTCCGGC AACTGGCGCG 
    CCGTGCCGAC CAACACCGGG GTGATGCGTT GCAGCAAGAG CTGCCGGCTC 
    CGGTGGACGA ACTACCTCCG GCCGGGGATC AAGCGGGGGA ACTTCACTGA 
    GCAGGAGGAG AAGCTCATCG TCCACCTCCA GGCTCTCCTC GGCAACCGTT 
    CTCTACCATA ATCGTGGTCC ACAACATAGC CGTGCTTTCT GAATACTTTC 
    AATGGATAGT CAACGAAGCT CTACACTACA AATTTCTGCA ATAACATGTG 
    ATTTCACCAA TGAAAGATGG AACATTTATT GATTGGGATA TTGTTGACAA 
    TATATGGAAT CATGCTTTCA GGTGAGTTGC TTTATCTATT TGATGCAGAT 
    CTGAGTAATT TTGTGCCAAA AGTGCACGCC CAAAAAGCTG GCCACACTTG 
    TGGCAAAACT TGTCTGAAAA ATAAATCTAT GACATGAGAG GCACTGGAGT 
    AACCAGGTTT GGCACGCTGC TTATGTGGTT CGCCAAACAC TTGCCCGTTG 
    CCGCAAAAGG CCGAACGTGC CTAACTTGTT TCTGGGGAAG TTTGGGATGA 
    ACCAAACTCT ATCTTTAACA TAGTTTCTTT AGAATCAGCA ACAAAGTTAA 
    TCTTCTATGC CTCTATGGAA TCTTTTGGAT GTCAGCATGG TTACTGCTTT 
    ATGCCCACCA TCTTTTCACC TTACATATTT ATTTATGCTC TTCAAATATA 
    CTAATAGTGA AATCCCTTCT TATGTGTACA ACCGGATAAA GTTGATTAAA 
    TACTAGGATT TCCTTTGTAT GGCATGGAGA TGCAACTACT GAAGTTTTTT 
    GCTTTGTTAG CTTTTATCCT GAGGAGCATC CTATGTTGAT AGTTGAACCA 
    TCTACAAACA CAGGGCAGCA AAGAGAGAAG TATGTCCATA TGTTCTGTAT 
    TTAAATTAAT TGTGTTGCTT ATGTGGTCCT ATATCTAAAT TTAACAATTC 
    TCAAAACCTT TTTATCTTTT TTGTATCGTG GGTTGTCAAA ATAAGCAACT 
    ATAGTATTTC TACGTAAAAC ACCCATAAAG GGTATTTCAA TCGAAATCCC 
    AAAACAGGAT ATTGGTTCTT TCGCTTGCTC TTGATGATAC TGTAATGGAA 
    TGGCAAACCT ATTTCTTCGC ATTTTGGCTA ACAAATCTGA ATTATTTTGA 
    AGAATAGAAG GATAGACAAA ATTCCAATGA CCATTGGACA TGATTCGATC 
    TGGCGTTGAA TAATCAAGAA TTTCCCTATC TTTTTTAACA AAAGTATCCA 
    TTAAGGTGTT TCTTTTATCA TGCCATTTTT GTTATTTATC AGTTTTTTTG 
    GAACAAAAAC AATGTATTTT CTTAGTTGAT GCTTTATGCA GGTATCTATT 
    GACTTTAAAG ATCATGAAGG CATAATGCAT ATATCAAGGC TTTGACATGG 
    TCTTCGTGCA AGAATAAAAT GCCATTTTGT GTTCGTCAAC AAGTGTTATT 
    TATTTTTAAT CAACAATTGT TTGTCTTACT TCAGGTTCAC TGATCTAATG 
    TTTTAGTCTT GCACCTGTCA CTTGCTAATA ATGTTGTAAC CTTGCTCCTG 
    TCACTTGATA GTATTTCAAA TAATTTCCAA TATTATTTGT GCAGATTATA 
    TAAGGTCGCT TTAAGATTAC CATGTTCAGA TTCTTCTGCC GGCCCTGTTA 
    TTTACATTAT GCATTGGACT ATTGAGCCTG GTTGTTTTTG GAGGACCAGG 
    GAGCATGGCT GGAGTATCAT CTAGAGGATA ACCTGATGTG GATTATGCAC 
    TTGGCTTTGT CTTGACAAAT AATATATGCG GTATTGCTTG TAAGAGAGGT 
    CTTGTTTTCT GATCTTATCC TGGATTGTAT TAAGGACAAT TCATGTGGAT 
    TAAGGAGAAT TCAGAAACAA AATTTGG

    Gene models with high sequence identity

    1. AT3G28910.1 [+] show detail - myb domain protein 30
      E-value: 9e-39; Score: 23.90

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 2.2e-21
    Gene3D Homeodomain-related 2e-14
    HMMPanther R2R3-MYB TRANSCRIPTION FACTOR 8.4e-54
    HMMPanther Myb transcription factor 8.4e-54
    HMMPanther DNA-DIRECTED RNA POLYMERASE BETA CHAIN 3.9e-60
    HMMPanther DNA-DIRECTED RNA POLYMERASE 3.9e-60
    HMMPfam Myb, DNA-binding 5.6e-14
    HMMSmart SANT, DNA-binding 1.3e-12
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 19.751

    See the detailed result >

    AT3G28910.1

    Model type
    Protein coding
    Short Description
    myb domain protein 30
    Curator Summary
    transcription factor myb homologue
    Computational Description
    myb domain protein 30 (MYB30); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 96 (TAIR:AT5G62470.2); Has 9437 Blast hits to 8283 proteins in 550 species: Archae - 0; Bacteria - 9; Metazoa - 928; Fungi - 510; Plants - 5797; Viruses - 10; Other Eukaryotes - 2183 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR