K31602

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31602

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31602

Determination of introduced cDNA(s)

  • J033114G12 - Rice Full-length cDNAs - Original: J033114G12

    full reading [+] show sequence

    Nucleotide sequence: J033114G12 - full reading 
    GGGAGATCTC GCAAGGTCAG GGAGCCAGCA AATTCACCCG CGATTCCGCG 
    CGCCGCCGCC GTCGCCGCCG CCGACGTCGC CGCCTGGGTG GGGGAGGAGA 
    TGGCCGGCCT CGGGAAGGCC TTCTACGCGG TAGGGTTCTG GATCCGGGAG 
    ACCGGCCAGG CCCTCGACCG CCTCGGCTGC CGCCTCCAGG GGAACTACTA 
    CTTCCACGAG CAGCTCTCAA GGCATCGCAC ACTTATGAAC ATCTTTGACA 
    AAACCCCTCA TGTTCACAGA GATGCATTTG TTGCCCCAAG TGCATCTCTC 
    ATTGGTGATA TTCAAGTTGG ACAAGGAGCT TCAATTTGGT ATGGATGCGT 
    CTTAAGAGGG GATGCAAACA ACGTTCAAAT TGGATCTGGG ACCAATATAC 
    AAGACAATTC TCTTGTCCAT GTGGCAAAAT CTAATCTTAG TGGAAAAGTC 
    TTTCCAACCA TCATTGGGGA TAACGTCACA GTAGGTCATA GTGCTGTATT 
    ACAAGGATGT ACTGTTGAGG ACGAAGCATT TGTTGGTATG GGGGCGACCC 
    TGTTAGATGG TGTTGTCGTG GAAAAGCATG GGATGGTTGC TGCTGGAGCC 
    CTTGTAAGAC AGAACACAAG GATCCCCTGT GGAGAGGTAT GGGGAGGAAA 
    CCCTGCCAAA TTCCTGAGGA AGCTCACTGA TGACGAGATT ACGTTTATCA 
    AAGAATCAGC TTCTAACTAT TCCACTCTGG CAAAGGCCCA TGCTGCTGAG 
    AATGCCAAGC CTGTTGAAAA GACTGAATTT GAGAAGCTGT TCCGCAAGAA 
    GTCTGCTCAC CAGGATGAGG AACACGATTC AATGATTGGT GCTACTCGGG 
    AGGTTACTCC GGAGCTGACG CCCTCGAGTT CTGCCCAATA AACCTTGTTT 
    CTGTTTTTGC TTCTCTCTGG TGCCTTTGCA TCATCTTATA TTGGACAGTG 
    CAGGATTGTT GAAGGTGACA CTGTTCCATG AGTTCGGCGG TTTATGTTTA 
    CTTTCCTCCC CAATAATTTT GGGTCGAGCA TTGTGC

    Gene models with high sequence identity

    1. AT1G19580.1 [+] show detail - gamma carbonic anhydrase 1
      E-value: 3e-119; Score: 425.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MANNOSE-1-PHOSPHATE GUANYLTRANSFERASE 1.5e-06
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1.5e-06
    Gene3D no description 6.8e-59
    superfamily Trimeric LpxA-like 1.2e-44

    See the detailed result >

    AT1G19580.1

    Model type
    Protein coding
    Short Description
    gamma carbonic anhydrase 1
    Curator Summary
    Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.
    Computational Description
    gamma carbonic anhydrase 1 (GAMMA CA1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 10894 Blast hits to 10839 proteins in 2210 species: Archae - 265; Bacteria - 7962; Metazoa - 13; Fungi - 83; Plants - 197; Viruses - 0; Other Eukaryotes - 2374 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR