K31614

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31614

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31614

Determination of introduced cDNA(s)

  • J013063G02 - Rice Full-length cDNAs - Original: J013063G02

    full reading [+] show sequence

    Nucleotide sequence: J013063G02 - full reading
    TGGTCTGGTA TTTTGAAACG GGGAGGCGGA ATGCTCGACC GATCCCTCAG 
    GCCGCCGCAG CCGCAGCAGG CGGCGGCGGA GGCGGAGGCG GGCCCCGGCG
    GTGGCGAGGG AGGGGGGAAC GTGGATCGGG TGCTGTTCAA GAACCTCGTC
    GAGATGGTGC CGCTCGTGGA GTCGCTCATG GACCGGAGGT CGAACCCGTC
    CTACTCGAGG CGCGCGTCGA TGGTGTACAC GCCGGCGCCG GCGAAGAAGG
    GTTCTGATTT GAAGAGTGTG AAGTCGCCGC AAAGTGTGTC GGTGAAAAAA
    CGGAGGGATC CTGGAGAGAC GGGCAAGAAG AGCACCGCCG ACTCCAATGG
    TGAGAATGGC GCGGTTGCGC CAGTCGGTCT GTTGGGGGGA GAAAATAAAC
    CCAAGGATAA GGATGAGATC GTTTTGCTGC GTGAGCAGAT CGAAGAGTTG
    CAAAAGACGC TGCTTGAGAA AGAGGAAGCA CTGAAATCCG CGGAGAGTTT
    GGTGGGTGAG ATGAATACAT TATATTCGAC AGTAGATGAG CTGAGACGCC
    AGGTTGCTGA CAAGGAAGGT TTGATCAAAT CTATCAATTC TCAGCTGCAC
    AATGCGAAGA TTATGCTTGC AGACAAGCAA GCATCATTAG AGAAATTAGA
    ATGGGAGGTG AAGACGTCAA ATAAGAAAGT AGAAGATCTT CAAGGGGATG
    TCTCCAATAT GGAGTTTGAG ATAGGTTCGT TGATGGCATT ATTCGAAAAA
    ATTTCGGAGA ATGTTTCAGG TGAACTCCAA GATGGTAGCT TGCCATCATC
    TTTTGAATTG GAAGCACTTC AATCAACTAG CGAAATCGAC AAGATTGAGG
    TTGAGAAGAT AGAGCAAGAA GCGGTTACAT ATGCCGAAGC TCTTGCTGCA
    GCAAGAGAGA ACCCAAACGA GGAGCAGCTG AATATAGCTG CGGAAGCACG
    GTTAAGGCTG CAGGTCCTTG TGCTATGATG CGCCAAGTGC ATATTGTAGT
    GTATGTGTAT GATAATGTCG AATCGCTGAT GTAATTATGT GTGCGTGCTT
    GATCGAGTTT ATTTCATGTG AGACCGTACT GACGGTAATC GATCAAGCAC
    CAGATACTGG ACACTTATTT AATTGGAGAT GATGTTTATT C

    Gene models with high sequence identity

    1. AT5G08120.1 [+] show detail - movement protein binding protein 2C
      E-value: 3e-25; Score: 113.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPfam Vps5 C-terminal 4e-06

    See the detailed result >

    AT5G08120.1

    Model type
    Protein coding
    Short Description
    movement protein binding protein 2C
    Curator Summary
    Microtubule-associated and viral movement protein binding protein. Negatively regulates KN1 association to plasmodesmata and, consequently, cell-to-cell transport. Involved in the alignment of cortical microtubules, the patterning of stomata and in restricting tobamoviral infections.
    Computational Description
    movement protein binding protein 2C (MPB2C); Has 5726 Blast hits to 4344 proteins in 670 species: Archae - 77; Bacteria - 646; Metazoa - 3260; Fungi - 443; Plants - 256; Viruses - 12; Other Eukaryotes - 1032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR