K31638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K31638

Determination of introduced cDNA(s)

  • J023143O14 - Rice Full-length cDNAs - Original: J023143O14

    full reading [+] show sequence

    Nucleotide sequence: J023143O14 - full reading 
    GGATTGCGAT CCGGAGGAGA AGGTCGCCGA ATTCCGTCTT ATCCAGAGAT 
    GGGGAGGTAA AAAGGAGGGG GATCCACCTA ACCAACCAAG TTGCGTCGCG 
    CCTAAAAAAA ATGGCCGCAC GCGCTCCGCC CCGGCAGCAC CGGTCAATTC 
    CTGCTGCTTC CTCGAGTCAA CTGCTCCAGC GCAGCGCCCC ACCCACGCCT 
    TTTACCCGCG CGCCAGCGGC GGCGGCGGCG GCGGCGGGGT GAGGAGGTGA 
    AGTGGGAGAG GCGGCGTGGA CCTGCGACGA CCTGCTTGCT GCCCAGCCTG 
    CGAGGGCAAG CCACTGGTGC CATACTGGAC TGGCTTGCTT GTTAACTGGG 
    TTAGCCAGGG ACTCCGGTAT TATACTACTA TGATCAGTTC GTGTACTTTT 
    TTTCGCCGGG CAAGTTTCCC CAAGGAACTC TTTTGATGCT GTAATTATAA 
    CTGAAGAGTC ATGGATCTGC TCAGCGTCCT CCTAATTATA GCATCTCTGC 
    TCCCATTTTC AGCATCTGAC CGTCAAGGTG ATGCACTATA TGATATGAAG 
    CTGAAGCTGA ATGCTACTGG TAACCAGCTT TCTGACTGGA ACCAAAATCA 
    AGTTAACCCA TGCACTTGGA ATTCTGTTAT TTGTGACAAC AACTACAATG 
    TTGTGCAAGT GTTTTTTGTT TGTTCCAAGT TGGTGTGCCT GATGACAGAT 
    GCCCTCCTGC AGAACATTGG CATCTATGGG ATTCACTGGA GTTCTATCAC 
    CACGAATTGG AGAGCTTCAG TTTTTGAATG TTTTGACCTT GCCTGGTAAT 
    AAGATTACTG GTGGCATACC TGAGCAGATC GGCAACCTAT CTAGTTTGAC 
    AAGTTTGGAT TTGGAAGACA ATTTGTTGGT TGGACCAATA CCGGCTTCTC 
    TTGGCCAGCT TTCAAAGCTC CAAATTCTGA TACTAAGTCA AAACAATCTC 
    AACGGAACTA TACCTGATAC TGTAGCAAGA ATCTCAAGCT TGACAGACAT 
    TAGGTTAGCC TACAATAAAC TCTCTGGTTC AATACCTGGT TCGCTGTTTC 
    AAGTTGCACG TTACAACTTT TCTGGTAATA ACTTGACTTG TGGAGCAAAC 
    TTTCTGCATC CATGCTCATC AAGTATTTCT TATCAAGGTT CATCCCATGG 
    CTCAAAGGTA GGCATTGTAC TCGGAACAGT TGTAGGAGCA ATAGGGATAC 
    TTATAATAGG GGCTGTGTTT ATTGTCTGTA ATGGAAGGAG GAAAAGCCAT 
    CTACGAGAAG TTTTTGTCGA TGTATCAGGC GAGGACGATC GAAGAATTGC 
    ATTTGGTCAG TTGAAAAGAT TTGCCTGGCG AGAATTACAA CTTGCAACCG 
    ATAGTTTCAG TGAGAAAAAT GTCCTTGGAC AGGGGGGTTT CGGTAAAGTG 
    TATAAAGGAG CACTTCCAGA TGGCACTAAG ATTGCTGTAA AGCGGTTGAC 
    AGATTATGAA AGCCCTGGTG GGGAGGCTGC ATTCTTGCGT GAAGTAGAGC 
    TTATCAGTGT TGCAGTTCAC CGGAATCTTT TAAGATTGAT TGGCTTCTGT 
    ACAACACAAA CAGAACGTCT ACTTGTTTAT CCTTTCATGC AGAATCTTAG 
    TGTGGCCTAT CGTTTACGAG AATTCAAACC TGGCGAACCA ATATTGGATT 
    GGTCAGCAAG GAAACGTGTG GCAATAGGCA CAGCACGTGG ACTGGAGTAC 
    CTGCACGAGC ACTGTAATCC CAAGATCATA CATCGAGATG TCAAGGCTGC 
    CAACGTCCTG CTTGATGAGG ATTTTGAGCC AGTTGTTGGT GACTTTGGCC 
    TGGCAAAGTT GGTTGATGTA CAGAAGACAT CAGTGACAAC TCAAGTCCGT 
    GGAACTATGG GTCACATTGC GCCTGAATAT CTGTCCACAG GGAAGTCATC 
    GGAGAGAACT GATGTTTTTG GTTATGGCAT AATGCTTCTT GAGCTGGTCA 
    CTGGACAACG CGCCATCGAC TTCTCACGGT TGGAGGAAGA AGACGATGTG 
    CTACTGCTTG ACCATGTGAA GAAGCTGCAG AGGGAAGGGC AGCTGGGCGC 
    CATCGTGGAC CGGAACCTGA GCAGCAACTA CGACGGGCAG GAGGTGGAGA 
    TGATGATACA GATCGCGCTG CTGTGCACAC AGGCGTCGCC GGAGGACCGG 
    CCGTCCATGT CGGAGGTGGT GCGGATGCTG GAAGGGGAAG GACTCGCGGA 
    GCGGTGGGAG GAGTGGCAGC AGGTGGAGGT GACGCGGCGG CAGGACTACG 
    AGCGGATGCA GCAGCGCTTC GACTGGGGCG AGGACTCCAT CTTCAACCAG 
    GAAGCCATCG AGCTCTCCGC CGGCAGATGA CGACTGCGTA CGTCCTGATG 
    CATGTCACTT CCCAATCCCA GTGTTAATAG ATATACATGT ATGTATATGT 
    ATGGTTGGCT CTTAGTTACC ATAGGGTTGG TTATGTCACT AAAGAACCCA 
    TGTCAAGCCT CCATTTGTGT AGAGGAAAAC AGCTAGAGAC GCATGTGTTC 
    AGAGTTC

    Gene models with high sequence identity

    1. AT5G10290.1 [+] show detail - leucine-rich repeat transmembrane protein kinase family protein
      E-value: 0; Score: 70.50

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 4.5e-76
    superfamily L domain-like 5e-28
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 6.9e-10
    HMMPfam Serine/threonine-protein kinase-like domain 5.6e-41
    HMMPanther PROTEIN SERINE/THREONINE KINASE-LIKE PROTEIN 8.4e-272
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.4e-272
    Gene3D no description 6.9e-25
    Gene3D no description 2.2e-22
    Gene3D no description 3.8e-46
    ProfileScan Protein kinase, catalytic domain 34.76
    HMMSmart Serine/threonine-protein kinase domain 1.4e-26
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.2e-25
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT5G10290.1

    Model type
    Protein coding
    Short Description
    leucine-rich repeat transmembrane protein kinase family protein
    Computational Description
    leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G65240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR