K31650

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K31650

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K31650

Determination of introduced cDNA(s)

  • J013061K16 - Rice Full-length cDNAs - Original: J013061K16

    full reading [+] show sequence

    Nucleotide sequence: J013061K16 - full reading 
    GGCTCTCGCC CTCCTCCTCC TCATCTCATC TCGCGATTGG TGAAATTCTA 
    GGGTTGTGCG GATTTGCTCC CCCGGGCCAA CCGGATCCAG GTCGACGAGC 
    GCGCGCGCGC GAGGGGTCTT CAAAAGCGCT CTTCGGGATC GCGTTCGCGT 
    GAGCGCCAGC TATACACTCA CTCCGCCGCC GCGACGAACG ACTTGGGGCT 
    TCTCCGTTGG CTACTGCTAT TGCAGGGTCT AGTCTGAAGT CTGAACATAA 
    ATGATGAATC TTCTCAGAAT GTGGAAGTTT GAGCTCTAAA TCCACTTGGT 
    TTGTGAGGTG TTAAGAGCAC TGGACAGTGA TAGTTGTTAC TGTGCAAAAT 
    GTTTTGGCAC GTACCTGGAA TCTCTGCTGC ATCACCGGTG GATACTATTT 
    TAGACAAGGA AAATTTCAAG TTGGAGGACC TTCTTGATGA GGATGAAATA 
    ATCCAGGAGT GCAAAGCACT AAACACCCGC CTAATCAATT TTCTGCGGGA 
    CAAAGTTCAA GTGGAGCAAT TACTCCACTA CATTGTCGAA GAGGCACCTG 
    AAGATGCTGA AAAGAAGAGG ATATTTCGAT TTCCTTTTGT AGCTTGTGAA 
    ATATTTACAT GTGAAGTGGA TGTCATAATG AAGACATTAG TGGAGAATGA 
    AGATCTCATG GACTTGCTTT TCTCCTACTT AAAACCTGAC CGACCTCATG 
    GGACACTGTT GGCTGGTTAC TTTTGTAAGG TCGTGATTTG CTTGATGCTG 
    AGGAAGACTC TCCCATTCGT CAATTATGTG CAGGGCCATC CTGAAATAGT 
    TAGCCAACTT GTTGACCTTA TTGGTATAAC TTCTATAATG GAGGTGTTGA 
    TCCGCTTGAT CGGTGCTGAT GAAACTATGT ATTCTGGTTA TGTTGACTCA 
    ATGCAATGGT TGGATGACAT AAAGGTCCTT GAGATGATTG TTGACAAGTT 
    CAGTTCATCT GATTCTCCTG AGGTTCATGC AAACGCTGCT GAAATCCTTT 
    GTGCGATAAC TAGATATGCC CCACCAGCGC TTGCTACAAA AATATCCAGT 
    GCAAGTTTTG TGGCGAGACT ATTTCACCAT GCTTTTGAAG ATTCAAGGCC 
    TAAATCGGTG TTGGTCCACT CATTGTCAGT GTGCATATCT TTGTTGGATC 
    CTAAGAGACT TGTATTAGCT TCCTACCAAG TTTTCCGTAG TCAACTAAGC 
    CATGCAACAT TGGTCACTGC AAGTCCAGAG ACAGTTGGTG GCATGCTGGA 
    TAGCCTAGGT GATTTGTTGA AGCTGCTGGA TGTTTCATCT GCTGAAAATG 
    TTCTGCCAAC GACATATGGA GTCTTACAAC CTCCTCTAGG AAAGCAACGC 
    TTGAAGATTG TAGAGTTCAT CTCCGTCCTG CTCTCAATTG GAAGTGAAGC 
    TGCTGAAATT CGATTGATCC ATCTAGGAGC AATCAAGCGT GTCATAGATC 
    TATTTTTTGA GTACCCTTTT AACAACTTTT TGCACCACCA TGTGGAGAGC 
    ATCATCAGTT CTTGTTTAGA TAGTAAGCAG GATCAGCTGA TCTGTCATGT 
    TCTTGATGAG TGTAAGCTTG TTACAAGAAT TTTGGAAGCT GAGAAGAACT 
    CTGCTCTATC AATAGATTTA ACTAAGCACA CGGTTCCTTT GGAGGGGAGA 
    TTTACACCAA GGATCGGACT TGTTGGTCAT ATGACACGCA TATCTAACAA 
    ACTCATTCAG CTGGCTAAGA CCAACAGCAT AATTCAATCA CATTTGCAGC 
    AAAATTCTGG GTGGGCTGAG TGGCATGCTG GAACCCTAAC TAGGTGTAAC 
    GCAGTAGAAA ATGTTTACCA GTGGGCTTGT GGCCGGCCAA CAACACTGCA 
    GGATCGAGGT AGGGACAGTG ATGAAGAAGA CTTTCGAGAT AGGGACTACG 
    ATGTTGCTGC GCTTGCTAGC AATTTGAGTC AGGCATCTAA ATATGGTATT 
    TACAGTTATG AAGATATTGA TGAGGATCAA GTACCACATG AGCGAGATGA 
    TGAGGACGTA TATTTTGACG ATGAATCTGC TGAAGTGGTT ATTTCCTCTC 
    TTCGTCTTGG TGATGAACAT GACAGCAACT CCTTGTTTAC AAATTCCAAT 
    TGGTTTGCAT TTGGTGAGGA TAAAGCACTG AACGGCGAGG TCAACCCAGA 
    AGCTTCCCCA TCCCCAAATT CAGAGATATC TTCTCCAAAT GTTGATGATG 
    AGAATGATGA AGTCATTCTT ACTGAGGTTA CAGATGGCAG AAAGGGTTCA 
    GAGTCACTTT TAGCAGTCGA CTTGAATGAA GAATCTAGTC ACACAGGCTT 
    GACAAATGTC TCCATTGATA AATTGGAAGA TG

    Gene models with high sequence identity

    1. AT1G30470.1 [+] show detail - SIT4 phosphatase-associated family protein
      E-value: 0; Score: 733.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SIT4 phosphatase-associated protein 2.5e-49
    HMMPfam SIT4 phosphatase-associated protein 5.7e-38
    HMMPfam SIT4 phosphatase-associated protein 8.2e-26

    See the detailed result >

    AT1G30470.1

    Model type
    Protein coding
    Short Description
    SIT4 phosphatase-associated family protein
    Computational Description
    SIT4 phosphatase-associated family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT3G45190.1); Has 14427 Blast hits to 7672 proteins in 774 species: Archae - 138; Bacteria - 5542; Metazoa - 3700; Fungi - 2195; Plants - 440; Viruses - 108; Other Eukaryotes - 2304 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR