K32105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed::Number::few)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32105

Determination of introduced cDNA(s)

  • J023002G03 - Rice Full-length cDNAs - Original: J023002G03

    full reading [+] show sequence

    Nucleotide sequence: J023002G03 - full reading 
    GGTGTTACGG GAGCATGGAG CTCACTGAGA GTAAGTGCGA TGGCGGGCAA 
    GAAGTTAGCT TGCTGGACGC TCAGCTCGAG CTCTACTGGA ACACCTTCGC 
    CGTCATCAAG TCCATGGCTC TCAAGTCGGC GCTAGACCTC CGCATCGCCG 
    ACGCAGTCCA CCTCCACGGC GGCGCCGCCA CCTTGGCCGA GATAGCCAGC 
    GAGGTGGCCC TCCACCCGTC CAAGATCCCC TGCCTCCGCC GCCTCATGCG 
    CGCGCTCACC GTCTCCGGCG TCTTCGCCGC CGCCGTCAAG CCCGGAGACG 
    GTGGTGGTGG TGAGCCCGTG TACGAGCTCA CGCCGTCGTC GCGGCTCCTC 
    GTCGGCTCCT CGAACCTGTC CGGCATCATG TCCATGATCC TCCACCCGAC 
    GCTCGTCGTC CCCTTCCTCG GCGTCGGCGA GTGGCTCCGC CGCGACCGCG 
    AGCCGCCGGA GGAGGACCCG TACTGCATCT TCAAGCAGGC GCACGGCCGG 
    AGCCTGTGGG AGCTGGCCGG CCGCGACGCG GCGTTCGACG CGCTCATCAA 
    CGACGGGATG GTCTCGGACA GCCGCGTCAT CATGGACTAC GTCGTGAGGG 
    AGCACGGCGA GGTGTTCCGG GGGATCGCCT CCCTGGTCGA CCTCGCCGGC 
    GGGCTCGGCG CGGCGGCGCA GGTCATCTCG AAGGCGTTCC CGGAGGTGAG 
    GTGCAGCGTG ATGGACCTCG GGCACGTCGT CGCCAAGGCT CCCGCCGGCA 
    CCGACGTCGA GTACATCGCC GGCGACATGT TTGAGAGTGT GCCACCGGCA 
    GACGCTGTCT TCCTCAAGTG GGTTCTACAT GACTGGGGCG ATGACGATTG 
    CATCAAGATA TTAAAGAACT GCAAGAAAGC TATCCCTCCT AGAGACAAAG 
    GAGGAAAGGT GATAATCATG GATATAGTGG TCGGAGCAGG ACCGTCTGAC 
    CAGAAGCACA GGGAGGTACA AGCGTTGTTC GATATGTACA TCATGTTCGT 
    CAATGGCATT GAAAGAGATG AGCAAGAGTG GAAGAAGGTT TTTATGGGGG 
    CTGGATTTAG TGGGTACAAG ATTATGCCAG TCCTGGGTTT TAGGTCAATG 
    ATCGAGGTGT ACCCTTGAAG GTGACACCGG TGATTGTGAT TGTGAAATCA 
    ATGATTGGTG ATTAGTTGCT CGGTGGAGAT GTGGAGTGTA GCATGTTTGT 
    TTGTTGTTGT GAGATTCACA ATAGTGATGA TTGTGTGGGT GTGTTTTCTT 
    GGTTGTATGT GAAATTGTGA TTAGAATTCA GACCAATAAT AAATTGTGAT 
    ACTATGTTGT ATCGATGTAA ACTATAGGAA AACGACACGG GTGGACTATA 
    TTTATCC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-75
    superfamily "Winged helix" DNA-binding domain 5.4e-27
    HMMPIR O-methyltransferase, COMT, eukaryota 3.3e-163
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4.8e-27
    Gene3D no description 6.6e-69
    HMMPanther O-METHYLTRANSFERASE 4e-50
    HMMPfam O-methyltransferase, family 2 2.8e-71
    HMMPfam Plant methyltransferase dimerisation 8.6e-13

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J033035N15 - Rice Full-length cDNAs - Original: J033035N15

    full reading [+] show sequence

    Nucleotide sequence: J033035N15 - full reading 
    GGAAGAGGCA AACCAAACCA AACCCAACCC CTCCTCCGCC GCGGCCCGAA 
    ACCCCACCGG ATCGGCGGCG GCGGCGGCGG CAGGAGGCCG GCGGGCGGAG 
    GAGATGTCGC TGACGGAGGT CAGGATCGGG GAGGAGGTGT GGCTCACCTG 
    CCTCTCCCAC GCCCTCACCA CCGAGACGGA GGAGGTCATG GGCCTCCTCT 
    TCGGCGACAT CAAGCATTCG AGCAGGGGCG GGGTGACTGC TCTGATATGG 
    GGGGCGTCGC CGCAGATGAG GTGCGAGCGG AAGAAGGACA GGGTGGAGGT 
    CAACCCCGAG CTGCTCGCGG CGGCGACGGC GCAGGCCGAG AGCTTGTCGG 
    CCACCATCGG CGAGAAAACG AGGGTGATTG GATGGTACCA CTCGCACCCG 
    CATATCACCG TTCTGCCTTC CCATGTAGAT GTTCGGACCC AGGCAATGTT 
    TCAGTTGATG GAGCCAGGTT TTGTGGGTCT GATATTCTCT TGTTTTAGCG 
    AAGATGCTCA AAAGGTTGGA AAAATCCAAG TGATTGCTTT TCAGTCACTT 
    GGTGGAAATC AGCAATCTGT TGTTCCTGTT AATGATCCAG TCATTAACCT 
    TGAATCATCT TGGAGTTCGT TGGATGATAC CTCACATCCG GCATTGATTG 
    AAGGCATTGA ACAAGACACG GGGGATTCTA AATCTTCAAG AAATAGCAAG 
    GTGTGGGCAA AATCTTCTGA TGTGGATTTC TATCCTCATT TTGACGCCAA 
    TCACTCAGCA AAACATCAAT CCAAAGAAAA TGCTATAGTT GCATACGATC 
    CCAATAATGC ACCTGAGACC CCTGTTGATC TAGATGAATC AGATATGACC 
    CCAAGCATCC AGGAGGCGTT GCACAGGTCA AACATGGACA TTAGTGGTGC 
    AGAATATGTA AGAAAGGAGG TGCCACTTTA TGTATTTCCG ACCAGGCATC 
    TGCTAAAGCT GGACACCACA TTAACTTCTT ACTGTGATAT GCAACATGTC 
    GTTTTCGAAG AGGAAAAATC AGCATATAAT CAAGCCATGC ATCAAAATAT 
    TCGTGATGGG AAGATCCACC CACTTACATC TATTCACCAT GCATCTACAT 
    ACAACTCATC TCTCTGCAAA TTAATGGAAT ACTGTTTGAG CCCTGCTATA 
    ACTGTACTTC AGGATCGTCT GAAGGAAAAT GAACTTCGGT TATCTATGCT 
    AATGGAGGAG GCTAAACAAC TTGAGGCAGA GAACCAGAGC ATGAGAAATG 
    ATTCTCCTCG TCGCTTGATG TATCATGGGA CTAGTGGCAC CAGTTCTCTG 
    ATGGCACAGG ATAAGCAAAT GAGCCCCAGA AGTCCTAGCG GCACCGGCCG 
    GAGAAAGGCT TCCTGATTTC AATCTTGTTC ACTTGACATG GTGAATATCG 
    TGAGCTGCGG TTCCACCCCT TGCTATCTGC AATCCCCATT TTTCCGGTGT 
    ATGAAGGTGT GTACAGTGGC TTTGTACATA CCTCAACTCC TCAGCACCAG 
    TGCTGTTGTA AAAGTTACTG CGGCCTCCCT TGGCTTTGTA CTGCTGTTCC 
    TCGCGCTGCT GCTTAATTTG CGCCAAATCC CTTTCCCTTC CGAGGGCTTA 
    TTCCATGAGC TTGTAGTTTG TGCTGGGGTG GTTGCTTTCT TTGAGCTATT 
    GCTAATTAAG ATGCAATGCA TTTCCCGTGC AGGCAAAGAC GAAGCTTGTT 
    TTTGCTTTGC TGTTGGAACA GATCATGTAC TATTACCAAT CCAAAAGCTG 
    AAATGCTCAG GCACACTTGC TGCCAAAGTG TCG

    Gene models with high sequence identity

    1. AT1G80210.1 [+] show detail - Mov34/MPN/PAD-1 family protein
      E-value: 4e-110; Score: 395.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Mov34/MPN/PAD-1 1.7e-24
    Coil coiled-coil 0
    HMMSmart Mov34/MPN/PAD-1 4.5e-12
    superfamily JAB1/MPN domain 1e-16
    HMMPanther C6.1A 7.8e-128
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -R 7.8e-128

    See the detailed result >

    AT1G80210.1

    Model type
    Protein coding
    Short Description
    Mov34/MPN/PAD-1 family protein
    Computational Description
    Mov34/MPN/PAD-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G06820.2); Has 1011 Blast hits to 924 proteins in 229 species: Archae - 0; Bacteria - 3; Metazoa - 473; Fungi - 224; Plants - 189; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR