K32125

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32125

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32125

Determination of introduced cDNA(s)

  • J033070O19 - Rice Full-length cDNAs - Original: J033070O19

    full reading [+] show sequence

    Nucleotide sequence: J033070O19 - full reading 
    GAATCTCCTT CAGTCCTACC TTGTCTTCCA TTTTTCACAA ATCGCAAGCA 
    AAGCCCCACA CCAAAATCCA CCCACGAAGG CCGAAGACGA CGAGGCAAGG 
    CAACGTCGGT GTTGTGAGGG GGACACACAC AAACACTCGA CCTTCGAGAG 
    ATTTCCGAGC GGCAGCAATG GATCTCTGGG AGAGGGCGCG GGCCTTCGCC 
    GGGGAGGCGG CGAAGCGGTC GCAGGAGCTG TCGGCGGAGG CGGCCAAGCG 
    CTCGTCGGCG CTGGTGTCGG AGACGGCGAA GAAGTCCAAG GAGATCTTCT 
    CGGAGACCGC GACCAAGTCG CGGGAGATCG CGGCCGAGGC CACCAAGCAG 
    GCCGACCTCC TCGCCGGCCA GATCAAGCGC CTCTCCACCG ACCTCCCCGT 
    CCCCTCCATC CCCGCGATCC CGCCCATCCC CACCGCCGTC ACGCCGGAGC 
    CGGACGCCGC GGAGCTCGAG CGCTACGGCA TCACCGAAGA CCTCCGCGAG 
    TTCGTCAAGG GCATGACTAT CAGCACCTTC CGCGACTTCC CCTTGCAAGA 
    TGAGCCGGAG ATGTCGGATG TGCCCACGGT ATCGAACGTG CGTCAGGATC 
    TGAATGAGTG GCAGGCCAGG CACGCCACTC TCGTCCTCTC CGCCGTCAAG 
    GAAATTTCAA AGTTCAGATA TGAGTTGTGT CCACGATACA TGAAAGAGCG 
    TAAATTCTGG AGGGTTTATT TCTTGCTAGT AAACAACTAC ACATCCCTCT 
    ATGAGAACAA ATATTTTGAG GAGCTGAAAG TAAAAGCAGA GGAGGAAAAA 
    ATGGATGCCA AGAAGGAAGT AACAGAGACC TCACAAGCTA CAACTGCAGA 
    ACATAAAGAC ATGAAGGTGC AAAGCAAGAC TTCAACTTCA ACAAATCCAG 
    AGCATGATTT GGATGTTTTC CTTCTGGGAG ATCTAGGCAG TGATGATGAG 
    GGTCCTGATG GTGATGATGA TGGGTTAGAT GATGACTTCG ATAAGATAGA 
    TGGCACTTCA GGCTTAGAGA GTGATGATGA TGATGACAAG GAAAAAGCAG 
    CAGGCAAGGC AGAAAGTGCA AAGGAGTAGC TTGCAGAGCT GGTGATCAAT 
    ATGATATGAA GTGCTTTCCC AGATCTACAC ATGCTTATCA TGACAACGAA 
    GGCTCTAGCA CGCAGCTTAC TGCACTAGTC CAGCTGCTAT TGTATAATAG 
    ATGGTTGCAT CTATCCATTC ATTTTTCTCC CACTGAAGCA ATGCTGCTTT 
    CGTTGTTGCA TTTTTCTTGT CCAAGATTTA GAAGGCTCTA TTGTTTTTCC 
    GTTTTCTGGA GCCATCTAGG GTGCTTTGCA TATGCCAATA TACTTC

    Gene models with high sequence identity

    1. AT1G26300.1 [+] show detail - BSD domain-containing protein
      E-value: 6e-49; Score: 192.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    ProfileScan BSD 10.915
    HMMPfam BSD 1.8e-12
    HMMSmart BSD 3.8e-08

    See the detailed result >

    AT1G26300.1

    Model type
    Protein coding
    Short Description
    BSD domain-containing protein
    Computational Description
    BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR