K32144

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32144

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32144

Determination of introduced cDNA(s)

  • J023012O14 - Rice Full-length cDNAs - Original: J023012O14

    full reading [+] show sequence

    Nucleotide sequence: J023012O14 - full reading 
    GGTCTGCCTC TCTCACCACC ACCACCGTGC GCTGCTCCAA GGGGGAGATG 
    GCGGTGGTGA AGTGCATCAG GGTCCACGAG CTGGGCGGGC CTGAGGTGTT 
    GAGATGGGAG CAAGTGGAGG TCGGGGAGCC CAAGGAGGGC GAGATCCGGA 
    TCAAGAACAC CGCCATCGGC GTCAATTTCA TCGACGTCTA CTACCGCCAG 
    GGGGTCTACT CCGCTCCACT GCCCTTCGTC CCTGGGAGGG AAGCCGTTGG 
    AGTGGTGACC GCTGTAGGTC CTGGCCTGAC TGGCAGAAAG GTTGGGGACG 
    TCGTCGCCTA TGCCGGCAAT CCCATGGGCT CTTATGCTCA AGAGCAGATT 
    ATTCCCGCCT CCGTCGCTGT TCCCCTTCCT CCTTCCATCG ACCACAACAC 
    TGCTGCCGCT ATTATGCTCA AGGGGATGAC TGCTCACGTT CTACTTCGCC 
    GTGTTTACAA GGTCCAGAGT GGTGATTGTG TTCTGGTCCA CGCTGCTGCC 
    GGTGGGGTTG GATCACTCCT TTGTCAATGG GCAAATGCCC TTGGTGCCAC 
    TGTCATCGGG ACTGTTTCAA ATGAGGAGAA GGCTGCACAG GCAGCTGAAG 
    ATGGATGCCA CCATGTCATC ATTTACACAA AGGAAGATGT TGTCACAAGA 
    GTCAAGGAGT TCACAGCTGG GAAAGGTGTC AATGTGGTAT ATGATTCTGT 
    TGGCAAGGAT ACATACAAGG GTTCGGTGGA ATGCTTGGCG TGGCGTGGTA 
    TGCTGGTGTC GTTTGGGCAG TCGTCAGGTA GGCCTGATCC CATTCCGCTG 
    AGCGATCTGG CAAGCAAGTC GCTGTTGGTA ACAAGGCCCA GCCTGATGCA 
    TTACGCTGCT ACCCGCGACG AGTTGCTGGA GTCGGCCGGT GAGGTGTTTG 
    CCAATGTAGG AAGCGGGGTG TTGCGCATCC GTGTGAACCA CACATATCCA 
    TTGTCTCAAG CTGCTCGCGC TCATGCGGAT CTCCAGGCCA GGAAGACGAC 
    CGGATCCATC CTGCTCATCC CAGATGATGC ATGATACTCC AGTACTAGTG 
    TAGGAGTAGT AGTTATTCCA GTACAAAAAG TGTCTCTTCT CCAATGCCGC 
    TGCTGTTTCT TACTTTAGTA CTCCTGTATT TTTCATGCAT TATCAATCAG 
    GTTCAGGTTT GGTTGCCAGT TGATGTGTGT CTGCGTGCGT TTCGTTGTGG 
    TTTTCATGTT GACAGGACAG GACGTATACT ATACATAAAT AAAGGGCAGC 
    ATCTTTGAAA TAAAGATCAC TTATACTATT

    Gene models with high sequence identity

    1. AT5G61510.1 [+] show detail - GroES-like zinc-binding alcohol dehydrogenase family protein
      E-value: 4e-136; Score: 481.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 5e-44
    superfamily GroES-like 2e-41
    HMMPfam Alcohol dehydrogenase, zinc-binding 3.1e-30
    HMMPfam Alcohol dehydrogenase GroES-like 1.5e-11
    Gene3D NAD(P)-binding domain 1.2e-48
    HMMPanther QUINONE OXIDOREDUCTASE, BACTERIA AND PLANT 1.6e-158
    HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 1.6e-158
    HMMSmart Polyketide synthase, enoylreductase 5.7e-28

    See the detailed result >

    AT5G61510.1

    Model type
    Protein coding
    Short Description
    GroES-like zinc-binding alcohol dehydrogenase family protein
    Computational Description
    GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: cell differentiation, response to high light intensity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR