K32218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32218

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32218

Determination of introduced cDNA(s)

  • J013118F01 - Rice Full-length cDNAs - Original: J013118F01

    full reading [+] show sequence

    Nucleotide sequence: J013118F01 - full reading 
    GGCCCCGGCC GCCGCTTGCA AGGTCGCCGC CGACGACGCG CGGAGAGGAG 
    AGGAGAGGAG AGAGGAAGAG AAAATCTTCC GATTCCGGCG AGGAGGGGAT 
    GGGGTCGGCG CTGCTGCCGA CGCTGCGGCG GAAGCCGGAG GTGGACGCCG 
    CCATCCGCGA CACGCTCGAC AAGGTCCTCG TCCTCCGCTT CGGCCGCGCC 
    GACGACGCCG CCTGCCTCCA CCTCGACGAC ATCCTCGCTA AATCTTCTTG 
    GGACATATCA AGGTTTGCGA CGGTAGCATT GGTCGATATG GATTCTGAGG 
    AGATGCAAGT CTACATTGAC TATTTCGATA TCACTTTGGT TCCAGCTACC 
    ATTTTTTTCT TCAATGCCCA ACACATGAAG ATGGACTCAG GGACACCTGA 
    TCACACAAAA TGGATTGGCT CTTTCAGCAG CAAGCAAGAT TTCATTGATG 
    TAGTTGAGGC AATATTTAGG GGTGCGATGA AAGGTAAACT GATTGTTTCT 
    TGCCCACTTC CACCAGAGAG GATACCCAAA TTCCAGCTCC TTTTCAAGGA 
    TGTTTGAGCA AGGAAAGTGC TCATCACATG CGCATGCTAA AAGAGTGTCT 
    TGGTCATGAT GACAGAACTA TATGAAGCTA TGTTCAGGCA GAAGAGTTTG 
    TGAAGATCTC GTCTCTCCAA TTGGTTTGTC TCGACTACTT TCATTTATGT 
    AGTAGTATAT CACATGCTGT GTTGATATGT ACCAGGCATG GTAGCTTTTG 
    TTCTGTACTT CTATAGGAGG CAAACTGAAT CGATCAAGAA AAGTGCATAT 
    CTGACATGGT GCCGCATAGT AAGCTTTTAG TAATTAACAC AAGTTAGAAT 
    GACACTTTGC ATGTAGTTTG CATTGCACTC TAAATACAGA GAAGGGTATA 
    AAATATTATT GCTCGTT

    Gene models with high sequence identity

    1. AT3G24730.1 [+] show detail - mRNA splicing factor, thioredoxin-like U5 snRNP
      E-value: 3e-60; Score: 229.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam mRNA splicing factor, thioredoxin-like U5 snRNP 2.1e-51
    superfamily Thioredoxin-like fold 6.9e-22
    Gene3D Thioredoxin fold 7.8e-50
    HMMPanther THIOREDOXIN-LIKE PROTEN 4A, 4B 5.1e-81
    HMMPanther mRNA splicing factor, thioredoxin-like U5 snRNP 5.1e-81

    See the detailed result >

    AT3G24730.1

    Model type
    Protein coding
    Short Description
    mRNA splicing factor, thioredoxin-like U5 snRNP
    Computational Description
    mRNA splicing factor, thioredoxin-like U5 snRNP; FUNCTIONS IN: catalytic activity; INVOLVED IN: mitosis; LOCATED IN: spliceosomal complex; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), mRNA splicing factor, thioredoxin-like U5 snRNP (InterPro:IPR004123), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: mRNA splicing factor, thioredoxin-like U5 snRNP (TAIR:AT5G08290.1); Has 535 Blast hits to 535 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 146; Plants - 109; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR