K32220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32220

Determination of introduced cDNA(s)

  • J013157L23 - Rice Full-length cDNAs - Original: J013157L23

    full reading [+] show sequence

    Nucleotide sequence: J013157L23 - full reading 
    GAGGAGGAGG AGGAGATAGA GTGAGGCCGT GACGGCGACG GCGAGGTCTG 
    GGGGCGGGGC GCGATGGGAG ACGGAGCGGA GGCGGCGGGG GCGACCGCGG 
    CGAGCAGGTT CGGGACGATC TGCGTCTTCT GCGGCAGCAA CGCGGGGCGC 
    CGCAGGGTGT TCGGCGACGC GGCGCTCGAC CTCGGCCACG AGCTGGTGAG 
    GCGGGGCGTC GATCTGGTCT ACGGCGGCGG CAGCATCGGG CTGATGGGCT 
    TGATCGCGCG TACGGTTCTC GACGGCGGCC GCCGTGTCGT CGGGGTGATT 
    CCTAGAGCTC TCATGGCTGT CGAGATATCA GGTGAGAGTG TGGGAGAAGT 
    AATAGTTGTA CAGGACATGC ATGAGCGGAA AGCGGAGATG GCTCGGCGAT 
    CCAAAGCGTT CATTGCTCTT CCTGGGGGCT ATGGAACAAT GGAGGAGCTG 
    TTAGAGATGA TAACATGGTG CCAACTTGGA ATTCATGACA AGCCAGTTGG 
    ATTGCTAAAT GTTGACGGTT ACTACGATCC ACTGCTCGCG TTGTTCGACA 
    AAGGCGAGGC GGAGGGCTTC ATCAACTCTG ATTGTAGACA AATATTTGTA 
    TCTGCACCAA CTGCAAGTGA ATTGCTGACA AAGATGGAGC AATACACTCG 
    GTTGCACCAG GAGGTGGCCC CTGCAACAAG CTGGGAGATC TCAGAGCTTG 
    GCTATGGAAG AACACCGGGC GCTGATCAAT CATAGCCCCC CTCACTTCAA 
    AAGTGACTAG TACAAGCTCT ACTAATGCCT TTGCTTTTGT TTTCCCTTGC 
    TTCTTGTGAT CAAGTGTCAA ATTAAACTCC TCACCG

    Gene models with high sequence identity

    1. AT5G11950.2 [+] show detail - Putative lysine decarboxylase family protein
      E-value: 5e-76; Score: 281.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Conserved hypothetical protein CHP00730 1.9e-62
    superfamily Putative lysine decarboxylase 1.1e-56
    HMMPfam Conserved hypothetical protein CHP00730 2.2e-44
    Gene3D no description 1.2e-58

    See the detailed result >

    AT5G11950.2

    Model type
    Protein coding
    Short Description
    Putative lysine decarboxylase family protein
    Curator Summary
    Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
    Computational Description
    Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR