K32337

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32337

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
  • low saturation (PATO:0000328)
    (Seed::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32337

Determination of introduced cDNA(s)

  • J033122O03 - Rice Full-length cDNAs - Original: J033122O03

    full reading [+] show sequence

    Nucleotide sequence: J033122O03 - full reading 
    GCACTTGCTT TCATCTTCAA TGGATAAAAC TGTACGGTTG TGGCACGTGT 
    CAAGCACTTA CTGTTTGAAA ACCTTCTCCC ACAGTGACTA TGTGACTTGC 
    ATCCAGTTCA ATCCTGTTAA TGATAAATAC TTCATTAGTG GTTCCCTGGA 
    TAAAAAGGTT CGAATTTGGA GTATACAAGA ACGCAAAATT GTTGACTGGA 
    TTGATCTGCA TGAAATGATC ACAGCTGCCT GTTATACCCC TGATGGACAG 
    GGTGCACTCG TTGGCTCCCA CAAGGGCAAG TGCCATGTCT ACGATATTTC 
    TGATAATATG CTTAAGCACA AGAAACAGAT TGATCTACAT ATTAAGAAAA 
    GGAAATCTAG CCAGAAGAAA ATCACAGGAA TTCAGTTTGT TCCAGGGAGT 
    TCTTCAAAGG TCATCATCAC ATCTGCAGAT TCACGAATTC GAGTTATTGA 
    CAGTTTTGAA CTAGTTTGCA AATTTAAAGG CTTTCGTAAC ACCAACAGCC 
    AAATTTCTGC TTGTTCAGCT GTGAAAGGGA GATATCTTAT CTCTGCAAGT 
    GAGGATGCCC ATGTATATAT GTGGAGATGT AATGATGATT CCGAACCAAA 
    CACAAAGAAG GGCATTGTTT CTATCACAAA TACCCATGAA CACTTCCACT 
    GCGAGGGTGT GACAGTTGCT GTTTCTTGGC CTTGTGCCAG CAGCACAATG 
    ACATCTAGAG AATGGCCTGA GAATGGCCTG TCTGGATCTG AGCTTGATAA 
    AGATCAGGAG ATGCCTGATG CTCAGCACCA GAGCAACATC ATCAGAAACA 
    CCAACCCAAA TCATAATGGT GATACATCTG CGACTTGGTC TGAAGAACTC 
    ATGACACCAA CAAAACAGAG CCCGCGGTCT AGTGCCAGCC ATCCTATGGA 
    GGGAGATCAA GCTCCGAGTC ATTCGGCCTG GGGCTTGGTG ATTGTCACAG 
    CAGGCCATGA GGGTCATATC AGAACATTTC AGAACTTCGG CTTTCCCGTT 
    AGAGTATAGC ATATGGACCT GGATGCTGAG TCATCCTGCA GGAGTGTAGT 
    TTTGTGTATA GAATACACGG AAATATATAT TCAATGAGAT GCACAGCATT 
    GGGTTGGGGG ATTGGATTTG GTTGCTCCTT GGTGCGCCTG CTTCAGAATT 
    TGGAATCTTC GACTAACACA TGGTCAGTAC TCAGGTACTT GTGGTATGAC 
    ATTCATTTTA GATATTACCT CAAATTGTAC ATGAAAGTGA ATCCCTAGAA 
    AGAGTAATGC TGTCCGCTGG TTGGAGTGAC ATCTTTCGCC CTCATCTTCA 
    ACCTTTGCTC CACTTTTTTT TAATACTCCC TACTATGTAT TCTTGTAAGG 
    GGAAAAAAAT CAGTGCTACA GAAAAGAGAT GCAAAAGAAA ATTACGTATT 
    GTGGGCAGTG GGCGTGTGGT GAAATTCTTT ACATTG

    Gene models with high sequence identity

    1. AT3G15470.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 2e-101; Score: 366.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily WD40 repeat-like-containing domain 3.3e-38
    HMMPfam WD40 repeat, subgroup 0.041
    HMMPfam WD40 repeat, subgroup 1.8e-08
    HMMPfam WD40 repeat, subgroup 1.5
    HMMPfam WD40 repeat, subgroup 0.15
    Gene3D WD40/YVTN repeat-like-containing domain 3.1e-34
    HMMSmart WD40 repeat 7.2e-10
    HMMSmart WD40 repeat 1.2
    HMMSmart WD40 repeat 8
    HMMSmart WD40 repeat 0.51
    ProfileScan WD40 repeat 2 10.442
    ProfileScan WD40 repeat 2 12.58
    ProfileScan WD40-repeat-containing domain 13.896
    FPrintScan G-protein beta WD-40 repeat, region 1.6e-05
    FPrintScan G-protein beta WD-40 repeat, region 1.6e-05
    FPrintScan G-protein beta WD-40 repeat, region 1.6e-05
    HMMPanther WD REPEAT DOMAIN 44 9.5e-94

    See the detailed result >

    AT3G15470.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G54200.1); Has 35932 Blast hits to 22007 proteins in 749 species: Archae - 56; Bacteria - 5680; Metazoa - 13723; Fungi - 7656; Plants - 4267; Viruses - 6; Other Eukaryotes - 4544 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR