K32529

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32529

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32529

Determination of introduced cDNA(s)

J013116N10 - Rice Full-length cDNAs - Original: J013116N10

full reading [+] show sequence

GAGTATACTC TCACTCTGTC TCCTCCCCCG CGTCGGTCGC TTCGCTTCTA 
CTGGAGGAGA GCAGAGGTGG TGGTTGGTGA GAGAGGATGC GCGGCGGCGG 
CGGCGGCGGC GGCGGCGGCG GCGAGGAGGC CGGCCAGAAG CTGAAGAGCA 
TGGACGTCGA CAAGCTGGAG AACGGCGGCG ACAAGCCCGC CCTCAAGTAC 
CACGGCTGGA GGGCCATGCC CTTCATCATA GGGAACGAGA CGTTCGAGAA 
GCTGGGGACG CTGGGGACGT CGGCGAACCT GCTGGTGTAC CTGACGCAGG 
TGTTCCACAT GCGGAGCGTG GACGCGGCGA CGCTGCTCAA CGGCCTCAAC 
GGCACCACCA GCCTCGCCCC CATCATCGGC GCCTTCCTCT CCGACGCCTA 
CCTCGGCCGC TACCTCGCCC TCGCCATCGC CTCCGTCGCC TCCCTCATCG 
GCATGTTCTT GCTGACGATG ACGGCCGCCG CGGACGGGCT GCACCCGGCG 
GAGTGCGGGG TGGGGGAGAC GTGCTCGAAG GCGACGTCGG GGCAGTTCGC 
GGTGCTGTTC ATGTCGTTCG CGTTCCTGGT GCTGGGGTCG GCGGGGATCC 
GGCCGTGCAG CATGCCGTTC GGCGCCGACC AGTTCGACCC CCACACGGAG 
TCCGGCAAGC GCGGCATCAA CAGCTTCTTC AACTGGTACT ACTTCACCTT 
CACCTCCGCC ATGCTCGTCT CCGCCACCGT CATCATCTAC GTCCAGAGCA 
ACGTCAGCTG GCCCATCGGC CTCGGCATCC CCACCGCGCT CATGCTCCTC 
GCCTGCGTCC TCTTCTTCAT GGGCACCAGG CTCTACGTCC GCGTCACCCC 
CGAGGGCTCC CCCTTCACCA GCATCGTCCA GGTGTTCGCC GCCGCGGCGA 
GGAAGCGGTC GCTCAAGCAG CCCAAGGACC CCAAGCAGGA CCTGTTCGAC 
CCGCCGCACA CCAGCGCCAT CGTCACCAAG CTGGCGCACA CGGACCAGTT 
CCGGTGCCTC GACAAGGCGG CCATCGTGTC CGGCCCCGAC GACGTGCGCG 
CCGGGGGCGC CGCGCCGTCG AACCCGTGGA GGCTGTGCAG CGTGCAGCAG 
GTGGAGGAGG TGAAGTGCCT CATCCGCATC GTGCCCGTCT GGTCCACGGG 
GATCATCTAC TACGTCGCCG TCGTGCAGCA GTCGACCTAC GTGGTGTTGT 
CCGCGCTGCA GTCCGACCGA CACCTCGGCC GGAGCTTCCA GATCCCCGCG 
GCGTCGTTCA CGGTGTTCGC CATGCTGGCG CAGACGCTGT GGATCCCCAT 
CTACGACCGC CTCCTCGTGC CGCGCCTCCG CAGGGTCACG GGCAAGGACG 
AGGGCCTCAC CCTCCTGCAG CGGCAGGGGA TCGGGATCGC GCTGTCGACG 
GTGGCGATGG TGATGTCGGC CGTGGTGGAG GACCGGAGGC GGCACATCGC 
GCTGACGCAG CCGACGCTGG GGACGACCAT CACCGGGGGC GCCATCTCGG 
CCATGTCCAG CCTGTGGATG GTGCCGCAGC TCATGGTGCT GGGGCTCTCG 
GAGGCGTTCA ACCTCATCAG CCAGATCGAG TTCTACTACA AGGAGATCCC 
GGAGCACATG CGGAGCGTGG CCGGCGCGCT CGCCTTCTGC AACCTGGCGC 
TGGGGAACTA CCTCAGTGGG TTCCTCGTCA CCATCGTGCA CCGGACCACC 
GGCGCCGGGA GCAACTGGCT GGCGCAGGAC CTCAACAAGG GGAGGCTCGA 
CCTCTTCTAC TGGATGATCG CCGGCATCGG CATCTTCAAC ATCATCTACT 
TCATGATCTG CGCCAAGTGG TACAGGTTCA AGGGGGCAGC CGCCAACTGA 
GATGCAAGTG AAGTGAAGTT TGTTCGTTTG GGTGGTTAAT TAATTATGTC 
AATGGCAGAT AATTAATTGG TGGAGTGCTT TTAGCTGGGT TTTTTTTTTT 
CTGCCTCATC ATTTCTCTCT TGTATTTTTG TATCTGTGGT GTCTTGAATT 
ATAAAATCTA TAGGATTAAG TGGGTGAGGA AAGAGAAGGA AAGAAACAAA 
AGGGTTGGTT TCTTGTAAGT GGTTAAAATT CAAAGATAAA TGAATCTTCA 
ATCCTAGTAA ATCGC

Gene models with high sequence identity

AT5G62680.1 [+] show detail - Major facilitator superfamily protein
E-value: 3e-167; Score: 585.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oligopeptide transporter	4.2e-67
HMMPanther	NITRATE TRANSPORTER (NRT1)	4e-303
HMMPanther	OLIGOPEPTIDE TRANSPORTER-RELATED	4e-303
superfamily	Major facilitator superfamily, general substrate transporter	3.1e-17

See the detailed result >

AT5G62680.1

Model type: Protein coding
Short Description: Major facilitator superfamily protein
Computational Description: Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to karrikin; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G47960.1); Has 3769 Blast hits to 3614 proteins in 562 species: Archae - 0; Bacteria - 609; Metazoa - 518; Fungi - 366; Plants - 2162; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link: InterPro Scan - TAIR