K32628

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32628

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32628

Determination of introduced cDNA(s)

  • J033118H09 - Rice Full-length cDNAs - Original: J033118H09

    full reading [+] show sequence

    Nucleotide sequence: J033118H09 - full reading 
    GGTAGATGCA CCCCTGGAAA ACCCAGGTAA TTACGAACTA GTCCTTCTCC 
    AGCCCGGCGA CGCGGGGGAA TTTTACAGAT AAGCCCTCGG ATTCCTTCCC 
    CCTATTCTCC GCTCCTCGCG TCGTCGTCCT CCGAGAGGGG GAGGAGAAGG 
    CGAGAAGGGG CTCCGGTGGT GGGAGAGGGA GACCGCCATT GCCGCTACTT 
    CCGAGTTCAG ATTGGGGAAG ATGGTTGTCC AGGAGTTCAC CGTTGATCTG 
    AACAAGCCTC TCGTTTTCCA GGTTGGCCAT CATGAGGAAC GTTATCAGGA 
    ATGGGTTCAT CAACCTATCG TGAGCAAGGA AGGTCCACGC TTTTTCGGAA 
    ATGATGTCCT GGAGTTCTTG ACGCGCACAA AGTGGTTTGC TGTGCCAACC 
    ATATGGCTGC CTGTCGTCTG CTGGTTGCTT GTGAAATCTA TTCGGATGGG 
    TCATACTATT CAGGAAGTAG GTCTAATGGC CCTATTTGGA ATATTCATTT 
    GGACATTGAT CGAGTATACT TTGCACCGCT TCCTATTCCA CATTGGGACC 
    AAAACCTATT GGGCAAACAC AGCACATTAC CTTCTTCATG GATGCCACCA 
    TAAGCATCCT ATGGACTCAC TCAGGCTTGT ATTCCCCCCT ACTGCAACAG 
    CAATTTTGTG TGTGCCGTTC TGGAAGCTGG TAGCGTTCTT CGCAACTCCA 
    ACTATCACTC CTGCGCTATT TGGTGGTGGC CTGTTGGGAT ATGTGATGTA 
    TGACTGCACT CACTATTACT TGCACCATGG ACAACCATCC AAAGAGCCAG 
    CGAAAAATCT CAAGCGGTAT CACCTCAACC ACCACTTCAG AATCCAAAAC 
    AAAGGCTTTG GCATCACCTC ATCACTCTGG GATTACGTTT TTGGGACATT 
    GCCTCCGTCG AAGACCACCG GAAAGAACAA CTGAGCCACT GACAGAAATG 
    TATTGTTTTG CATGAGAAAT TTTAGAGGAT ATGTAATATA TATATTAAGT 
    CTAGGCACAA CTGCTTGTTT TGTCTTTCTG GGACAACAGG TTCACATGCC 
    CATTCAGTTC GAATTCCTGT GGCTTACTGA TGACTGCCTT GATGTGGGTG 
    AAGAAGACAT TTCATTGCCT TGACATCCAA TGTTCTGAAT TCAGATAATA 
    GGCAGTTCTT GATGTGATCC ATATGCCATG TTAAGCTTAG CAATTCTATT 
    GGCATGTCCA ATTACAAAAT GTTTGTCTT

    Gene models with high sequence identity

    1. AT2G34770.1 [+] show detail - fatty acid hydroxylase 1
      E-value: 7e-102; Score: 367.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther FATTY ACID HYDROXYLASE 9.6e-100
    HMMPfam Fatty acid hydroxylase 6.9e-11

    See the detailed result >

    AT2G34770.1

    Model type
    Protein coding
    Short Description
    fatty acid hydroxylase 1
    Curator Summary
    encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death.
    Computational Description
    fatty acid hydroxylase 1 (FAH1); FUNCTIONS IN: fatty acid alpha-hydroxylase activity, catalytic activity; INVOLVED IN: very long-chain fatty acid metabolic process, negative regulation of programmed cell death; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: fatty acid hydroxylase 2 (TAIR:AT4G20870.1); Has 784 Blast hits to 784 proteins in 354 species: Archae - 0; Bacteria - 388; Metazoa - 105; Fungi - 140; Plants - 78; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR