K32745

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32745

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32745

Determination of introduced cDNA(s)

  • J023093O12 - Rice Full-length cDNAs - Original: J023093O12

    full reading [+] show sequence

    Nucleotide sequence: J023093O12 - full reading 
    GAGCCACACC ACACCAGAGT GGTGGTGGAA GGAAAGGAAA CGCGAGAAAG 
    AGAGAGAGAG AGAGGAGAGA GAATAAGAGG AAACAAAACC TCACCCCCGA 
    TCTCCTCCTC CTCCCACTCC GATCGCTCCC CGCCCCGATC GCCGCCGCTG 
    ACGCCGACGA AGGCATGGAG CAGCCGCACG CCGCCGCCGC CGCAGCTGGT 
    GGAGGGGAGG GGGAGGGCGG GGCTAGCCCC GACACCGGCC TGGAAGGGCC 
    GATGTGGAGG ATGGGGCTGG GAGGAGGAGG CGGGGGAGGT GGAGGTGGAG 
    GAGGAGGGGA TGGGGACGCG GCGGGGAGGC TGCCGGAGCG GCCCGGGGAG 
    GAGGACTGTG TCTACTACCT CCGCACCGGC GCGTGCGGCT TCGGTGACCG 
    CTGCCGCTAC AACCACCCGC GCGATCGCGG CGGCACTGAG TTTGGTGGAG 
    GTGCAAGGAA TGCAGCAGCA TTGGATTATC CAGAAAGGGC GGGTCAACCT 
    ATATGCGAGT ATTACATGAA GACTGGGACT TGCAAATTTG GTACCAATTG 
    CAAATATCAC CATCCTAAGC AAGATGGAGC TGTGCTACCT GTTATGTTAA 
    ACAACAGTGG ATTCCCTATA CGCCTGGGTG AGAAGAAGTG CTCCTACTAC 
    ATGAAAACTG GGCAATGTAA ATTTGGAACT ACATGTAAAT TCCATCATCC 
    GGAATTCGGT GGTGTTCCGA TGACCCCTGG AATATACCCA CCATTACAGT 
    CTCCATCTAT AGCTTCCCCT CATCCATATG CTTCTCTTGC AAATTGGCAA 
    ATGGGGAGAC CACCTGTAGT TCCTGGATCA TATATACCAG GCTCATACAC 
    CCCAATGATG CTCTCATCTG GAATGATCCC ATTGCAAGGA TGGAGCCCTT 
    ATCCGGCTTC GGTAAACCCT GTAGTGTCAG GTGGAGCTCA ACAAAATGTT 
    CAAGCTGGAC CTGTGTACGG CATGGGGCAC CATGGATCTT CCTCTACAAT 
    TGCTTATGGT GGTCCTTACG TTCCATATGC TTCCTCAACT GGACAATCAA 
    GCAACAATCA ACAAGAACAT GGATTCCCTG AGCGGCCAGG GCAGCCTGAT 
    TGTCAATATT ATATGAGAAC AGGAGATTGC AAATTTGGAG CTACATGTAA 
    ATATCATCAC CCCCGAGAGT TGAGTGCACC TAAATCAGGC TATATGGTCA 
    ACTCCCTTTG TCTTCCACTT CGTCCGGGGG CTCAGCCTTG TGCATACTAT 
    GCCCAAAATG GGTATTGCAG ATATGGAGTT GCATGCAAGT ATGATCACCC 
    AATGGGCACG CTTGGCTACA GTCCGTCTGC TTTGCCCCTC TCTGATATGC 
    CAATTGCCCC ATATCCTATT GGCTTCTCTA TTGCCACATT GGCTCCGTCT 
    TCGCCTTCCC CGGATTTAAG GCCAGAATAC ATTTCGACCA AAGACCAATC 
    TGTCAACCAA GTAACATCGC CAGTGGCAGC ATCCGAGCCT GTTGGATCAA 
    TATTGCCGAA AGGGGTTTTC CCAGCAGACA CCATGATGCG TGCTCAGACT 
    AACACAACAT CTGGTGGTAG CTCGAGTCCT GGCGGTGGTC GCTGATTTTT 
    CTGAGCTGAG AGATCTCAGC ACAATTTTTC AATCACTTGA CACAGTTATG 
    ATAGGCCCCT CCAATGTGAA TAAAAAGCTG TGGCCTCTGT AGAGAAGGCT 
    CGGCGAGGGT GGTGTTTCTC TGCCATCTCA ATAAAGCATT CATAGGTTAC 
    AGGCAAGCTC GATTCACTTG CAATTTTTGC GTTCTTCTGT TCTCTGAAAC 
    GGGAAAGAAA AGGAAGGTTT TTGAATGTCA GGCTCGATAG TTCTCATCGG 
    CAGTTCGCGG CACTGGGAGA CTCGGATCCA TTCCCTCGGT AAATAATTCT 
    CAGGCAAGGA GGTTTATACA TGCAGAAGCT ACTGGATTTT GCTCGTCCAG 
    CTTCCGGAGT TCGTCTTTTT CCCTTTTTTT TTTTGGTTCT GTATATTGTC 
    ATATATTATA TATCTATATA TTCAACGGAC ATGAGACTCG AAACTACATA 
    AGTACATATG TGTCTATACT GGGAGCAAGG CACATTGTAA CGGACAAGAG 
    ATGCTTATTT AATGAAAGTC TTGCTGGAAT ACTGAAATGG TAGTATAGAT 
    GAAGTCATTT TCATGCTTCT GTTATCCTTC

    Gene models with high sequence identity

    1. AT2G47850.3 [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
      E-value: 1e-112; Score: 404.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, CCCH-type 1.4e-08
    HMMPfam Zinc finger, CCCH-type 1e-09
    HMMPfam Zinc finger, CCCH-type 3.8e-09
    HMMPfam Zinc finger, CCCH-type 9.4e-10
    HMMPfam Zinc finger, CCCH-type 8.9e-08
    superfamily CCCH zinc finger 1.8e-07
    superfamily CCCH zinc finger 1.2e-06
    superfamily CCCH zinc finger 9.7e-06
    superfamily CCCH zinc finger 1.2e-05
    superfamily CCCH zinc finger 0.00016
    ProfileScan Zinc finger, CCCH-type 14.54
    ProfileScan Zinc finger, CCCH-type 15.788
    ProfileScan Zinc finger, CCCH-type 13.507
    ProfileScan Zinc finger, CCCH-type 15.497
    ProfileScan Zinc finger, CCCH-type 13.892
    HMMSmart Zinc finger, CCCH-type 9e-07
    HMMSmart Zinc finger, CCCH-type 2.2e-06
    HMMSmart Zinc finger, CCCH-type 2.8e-05
    HMMSmart Zinc finger, CCCH-type 2.2e-06
    HMMSmart Zinc finger, CCCH-type 2e-06
    HMMPanther PROLINE RICH POLYPEPTIDE 3 5e-06
    HMMPanther PROTEIN PHOSPHATASE RELATED 5e-06

    See the detailed result >

    AT2G47850.3

    Model type
    Protein coding
    Short Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein
    Computational Description
    Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR