K32829

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32829

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32829

Determination of introduced cDNA(s)

  • J033066K12 - Rice Full-length cDNAs - Original: J033066K12

    full reading [+] show sequence

    Nucleotide sequence: J033066K12 - full reading 
    TTACGGCTTG TGATATCTTT GCTCGTTTTT CTTCTTCTTC TCCGACGATC 
    TGCTGCTTCT TTCCGGCAAT GTGGCTCCAA AATCTTGATC CAGGCGGCGC 
    GTGCGGGTTC AAGCACACCA ACCAGTACCC GTTCATGTCG ATGACCTCCT 
    GCGGCAACCA GCCATTGTTC AAGGACGGCA AGGGATGCGG CTCTTGCTAC 
    AAGGTGAGTA GAGTACTCCA AACTAATCAA AAGATTAAAG AAAGAAAAAG 
    AAGCCCATTT ACATGGGGGG CCTAACTGTC AAAGCAGTGC ATGCCGTTGC 
    AGTCTTGACC ATCGGTCCGC AGGGTGGGAC CCACCGCCGA GAGCATGTGC 
    GCGTGGCCCC CTCCACCCCG GTTTTCGGTG GCAGTGATTG GCGCGCCAAA 
    TGCATTCAAT GCTAATGTTT TTTCTTCTTT TTTTTTCTTT TTAACATTAC 
    AGATCAGATG CACCAAGGAC CAGTCGTGCT CCGGCAGGTC GGAGACGGTG 
    ATCATCACCG ACATGAACTA CTACCCGGTG GCTCCGTTCC ACTTCGACCT 
    CAGCGGCACG GCGTTCGGCA GGCTCGCCAA GCCTGGCCTC AACGACAAGC 
    TGCGCCACTC CGGCATCATC GACATCGAGT TCACCAGGTC AGTGAAAGAA 
    ACCACATTGT ACTGTACTGA TGTAGTAGTG GTGGTAGTGT AGCCCTCCAA 
    ATCTGCCGTT GAAATTTGCT TCCAGTACTA CTACTAGTAG AGGGTAAAAG 
    TTGGGTGGAG TGGATGATGA GATGAGTGGA TCCACCCAAC TGCACACCTT 
    TAACTCCATT TCCGGACACC GGCAATGGAT TGCACATGCA TGTGCAGCTC 
    AGATGCAATG CAGCAACAAC TTTATTAGGT TTAGGATGTT TTTTTTTAAA 
    AAAAAATTTC ATCCTCTGCC AGACTGCAAC ATGCTCGTTT TTGGCTACTA 
    GCAGTAGGCA CGCCTCCCTT CTGCAGCCAA ACGTATGATG CGTGCCCTGC 
    TATTATACGC CACCGGCCAC CCCATTTCCA TCTTGTAGTA AAATGCTTTT 
    TATCAATCAA TGGGCCCCAA TCCGATTAAC AAAAAAAGTA GGACACGATT 
    ATTGTATTTC CACATGACCA GTAAAGCAGG CAGCATATGA CAAGATTAGC 
    AGCGGAGTAA TTCTCACTTG TGTTTAATTA ACTTAATGGT GGATTCGTGT 
    GATGTGATGG TGCAGGGTGC CATGCGAGTT CCCGGGGCTC AAGATCGGGT 
    TCCACGTGGA GGAGTACTCG AACCCTGTGT ACTTCGCGGT GCTGGTGGAG 
    TACGAGGACG GCGACGGCGA CGTGGTGCAG GTGGACCTGA TGGAGTCGAA 
    GACGGCGCAC GGGCCGCCGA CGGGGAGGTG GACGCCGATG AGGGAGTCGT 
    GGGGCTCCAT CTGGAGGCTG GACACCAACC ACAGGCTCCA GGCCCCCTTC 
    TCCATCCGCA TCCGCAACGA GTCCGGCAAG ACGCTCGTCG CCAACAACGT 
    CATCCCGGCC AACTGGAGGC CCAACACATT CTACCGCTCC TTCGTCCAGT 
    ACAGCTGAAC CGCCGCTCGC CGGCGGCGAC CCTCGGCGCC GGCATCGCCG 
    CCGCTGCTGC TGCTAGTAAT ACTACTACTG CTATGATGTA ATTGTGTTAC 
    CGGTTGGGTT CTTTGAGTTT GTTGGGGTTG GGGATTGTGT GGTCGGTCTG 
    TGTTGCGATT TGCAGAAACC GGGCGAGCGA AAGAAGAAAA AAAAAGCTGT 
    GTGGGAAATG GAGGAGGTAG GCGTACAAGG TTATGCTCTC CCGCCCACTC 
    TCGCTTTTAT AATTTATCAT TTTCAAATGG TGATGATATG ATGATTAATC 
    AAAAGGATTA TATTGCTACT TAAATTGTAT GGT

    Gene models with high sequence identity

    1. AT1G65680.1 [+] show detail - expansin B2
      E-value: 7e-22; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pollen allergen/expansin, C-terminal 2e-31
    HMMPfam Rare lipoprotein A 8.4e-05
    HMMPfam Rare lipoprotein A 2.9e-11
    superfamily Pollen allergen/expansin, C-terminal 1.5e-31
    superfamily Barwin-related endoglucanase 6.2e-08
    superfamily Barwin-related endoglucanase 5.4e-14
    ProfileScan Pollen allergen/expansin, C-terminal 25.612
    ProfileScan Expansin 45, endoglucanase-like 12.609
    ProfileScan Expansin 45, endoglucanase-like 12.315
    Gene3D Pollen allergen/expansin, C-terminal 2.4e-31
    Gene3D Pollen allergen, N-terminal 8.3e-09
    Gene3D Pollen allergen, N-terminal 1.3e-15
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Major pollen allergen Lol pI 1.1e-23
    FPrintScan Expansin/Lol pI 3.7e-06
    FPrintScan Expansin/Lol pI 3.7e-06
    FPrintScan Major pollen allergen Lol pI 1.8e-14
    FPrintScan Major pollen allergen Lol pI 1.8e-14
    FPrintScan Major pollen allergen Lol pI 1.8e-14

    See the detailed result >

    AT1G65680.1

    Model type
    Protein coding
    Short Description
    expansin B2
    Curator Summary
    member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR