K32904

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K32904

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K32904

Determination of introduced cDNA(s)

  • J033043B09 - Rice Full-length cDNAs - Original: J033043B09

    full reading [+] show sequence

    Nucleotide sequence: J033043B09 - full reading 
    GATAATTCAT CTCCACATTC TTCATTCTCC ATTAATTTCA CGGTTTCATC 
    TCGACATCTC ATCATCTGTT TTAAGTTGCT AGCTGAGGAG GAGGAGCAGG 
    TGCCAGCAAT GGCGTCGTCA AAGCCAATCC TGTACGGTGC CTGGATCAGC 
    TCCTGCTCTC ACCGAATCCG GATCGTTCTC AATCTCAAAG GTGTGGATTA 
    TGAGTACAAG TCAGTCAATC CTCGAACAGA TCCAGACTAT GAGAAAATCA 
    ATCCAATTAA GTACATACCA GCATTAGTAG ATGGAGACCT AGTTGTTTCT 
    GACTCTCTCG CCATTGCATT GTATCTTGAA GATAAATACC CTCAACATGC 
    TCTCCTACCT AAGGATCTCA AAAAGAAAGC TCTTAATCTT CAGATTGCAA 
    ACATAGTTTG TTCAAGCATC CAACCTCTCC AAGGTTATGC TGTAATTGGT 
    TTGCATGAGG GTAAGCTAAG CCCCGATGAG AGTCTTCAGA TAGTTCAGCA 
    TTATATTGAT AAGGGCTTCA AAGCAATCGA AAAGCTTTTA GAAGGATCCA 
    ACTTTAAATA TGCTACTGGG GACGAAGTTC AATTGGGGGA TGTGTTTCTA 
    GCACCACAGA TCCATGCTGG CATAAATCGC TTCCAAATTG ATATCACAAA 
    GTACCCAAAT TTGGCAAGAC TCCATGACAC ATACATGGAA ATTCCTGCAT 
    TTCAGGCAGC ACTTCCAAAG AATCAGCCAG ATGCACCTTC ATGCTAAAAT 
    CAAGATTGCA AACAAGCTGC CATATCCAAA GGTGCAAGAC CTGCTTGCCC 
    TTGTATAAGA GGGTCAGTGT TTGAGAATGT GGCTCTCCAC CAACCATGTC 
    ATATTGTCAT TTTGCATGAA TGTCTAAGGT GAAACCCTAG CGACTCTTGC 
    CCCGGCGGCG GCGGCGGCGG CAGCAAAGGC GAAGATGATC TACGACGTGA 
    ACTCCCCTCT CTTCCGCTCC TTCCTCAGCC AGAAGGGCGG CGCCTCCTCC 
    GACAAGAGGA AAATGGAAGA GCAAAAGCCA AAGGAGCAGA GGCCCAAGGC 
    CAGTGAGAAC AAGCCTGTGA TGAATGAATG AAGGCTTTCT GATGTGTTTG 
    GTCCTTACAA GGAATAGGCT TCAATCATGT GATTCCTAGT ATGTTTCTGT 
    ACTGGTTCTG TTTAAGTGAG TTTGATGTGA ACCATGTCTG GAACATCTGA 
    GAACTTCCCA GCTATCAATC TTTAATTTTA CATCTGAGAA CTTCCCAGCC

    Gene models with high sequence identity

    1. AT2G02390.1 [+] show detail - glutathione S-transferase zeta 1
      E-value: 3e-53; Score: 206.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutathione S-transferase, N-terminal 2.4e-14
    HMMPfam Glutathione S-transferase, C-terminal 8.1e-07
    HMMPfam Wound-inducible basic 1.9e-27
    HMMTigr Maleylacetoacetate isomerase 3.9e-75
    ProfileScan Glutathione S-transferase, N-terminal 25.473
    ProfileScan Glutathione S-transferase/chloride channel, C-terminal 21.617
    HMMPanther GLUTATHIONE-S-TRANSFERASE THETA, GST 1.4e-57
    HMMPanther GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, 1.4e-57
    superfamily Glutathione S-transferase, C-terminal-like 5.2e-31
    superfamily Thioredoxin-like fold 9.2e-27
    Gene3D Thioredoxin fold 4.1e-21
    Gene3D Glutathione S-transferase, C-terminal-like 2.2e-41

    See the detailed result >

    AT2G02390.1

    Model type
    Protein coding
    Short Description
    glutathione S-transferase zeta 1
    Curator Summary
    Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide.
    Computational Description
    glutathione S-transferase zeta 1 (GSTZ1); FUNCTIONS IN: glutathione transferase activity, catalytic activity; INVOLVED IN: toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Maleylacetoacetate isomerase (InterPro:IPR005955), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase (class zeta) 2 (TAIR:AT2G02380.1); Has 17196 Blast hits to 17170 proteins in 1512 species: Archae - 0; Bacteria - 9185; Metazoa - 2216; Fungi - 532; Plants - 2070; Viruses - 0; Other Eukaryotes - 3193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR