K33045

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33045

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33045

Determination of introduced cDNA(s)

  • J013091A22 - Rice Full-length cDNAs - Original: J013091A22

    full reading [+] show sequence

    Nucleotide sequence: J013091A22 - full reading 
    GGCTAGTCGA GGAGAGCACC CAACCCCTGC GCCGCCACCT CCGATCGTCA 
    GCCATGACCT TCAAGCGCAG GAACGGCGGC CGCAACAAGC ATGGCCGCGG 
    CCATGTGAAG TACATCCGCT GCTCCAACTG CGCCAAGTGC TGCCCCAAGG 
    ACAAGGCCAT CAAGAGGTTC CAGGTGAGGA ACATCGTCGA GCAGGCGGCC 
    ATCAGGGATG TCCAGGAGGC GTGCGTCCAT GACGGATACG TCCTCCCGAA 
    GCTGTACGCC AAGGTCCATC ACTGCGTCTC CTGCGCCATC CACGCCCACA 
    TCGTCCGTGT CCGCTCCCGC GAGAACCGCA GGGACCGCAG GCCGCCGGAG 
    AGGTTCAGGC GCAGGGAGGA TAGGCCTACT GGACCTCGCC CTGGTGGTGC 
    TGGTGGACCT GGTGCCCCTG CTGCTGCTGG ACCTGGTGGC CCCCCTAATG 
    TTGCTCGCAC CTAAACAGCC GTAGTCGCTC CTTTGTTACT CTATATCATA 
    TCCTGTTAAT GGCGCCATGG ATATCATCGT TATGGTCTTT CATGAGGTCA 
    AAGTCTTTCT TGGAACTAGC TTGTACTTTG CGATTGGCAG TGTGACAATG 
    GAAGTCTGAA TTTTTGCCTG

    Gene models with high sequence identity

    1. AT3G56340.1 [+] show detail - Ribosomal protein S26e family protein
      E-value: 5e-28; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein S26e 4.2e-50
    PatternScan Ribosomal protein S26e 0
    HMMPanther Ribosomal protein S26e 1.5e-82

    See the detailed result >

    AT3G56340.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S26e family protein
    Computational Description
    Ribosomal protein S26e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S26e (InterPro:IPR000892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S26e family protein (TAIR:AT2G40510.1); Has 761 Blast hits to 761 proteins in 271 species: Archae - 53; Bacteria - 0; Metazoa - 311; Fungi - 152; Plants - 116; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR