K33313

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33313

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33313

Determination of introduced cDNA(s)

  • J023139I11 - Rice Full-length cDNAs - Original: J023139I11

    full reading [+] show sequence

    Nucleotide sequence: J023139I11 - full reading 
    TTGGCGACAC CTAGCCCTTC TCGATCTCTC TCTCGCTGCA GATCCAAACC 
    AACCTCACCG TCGACGAGGA AGAAGGCGGC GGCGGCGGCG GAGGCGAAGG 
    CGGCGAAGAT GCAGTACAAG AACCTGGGGA GGTCGGGGCT GCGGGTGAGC 
    CAGCTGTCGT ACGGGGCGTG GGTGACGTTC GGCAACCAGC TGGACGTGAA 
    GGAGGCGAAG GCGCTGCTCC AGGCGTGCCG CGACGCCGGC GTGAACTTCT 
    TCGACAACGC CGAGGTGTAC GCGAACGGGC GCGCCGAGGA GATCATGGGG 
    CAGGCGATGC GGGACCTCGG GTGGCGCCGC TCCGACGTCG TCGTCTCCAC 
    CAAGCTCTTC TGGGGAGGGC AGGGCCCCAA CGACAAGGGC CTCTCCCGGA 
    AGCACATCGT CGAGGGCCTC CGCGGCTCGC TCAAGCGCCT CGACATGGAC 
    TACGTCGACG TCGTCTACTG CCACCGCCCC GACGCCACCA CCCCCGTCGA 
    GGAGACCGTG CGCGCCATGA ACTGGGTCAT CGACCACGGC ATGGCCTTCT 
    ACTGGGGCAC CTCCGAGTGG TCCGCCCAGC AGATCACCGA GGCGTGGAGC 
    GTCGCCAACC GCCTCGACCT CGTCGGACCC ATCGTCGAAC AGCCTGAGTA 
    CAACCTCTTC TCGCGCCACA AGGTGGAATC TGAGTTCTTA CCTCTTTACA 
    GCACGTATGG CCTGGGTTTG ACTACATGGA GCCCTCTAGC TTCGGGAGTT 
    CTCACTGGAA AGTATGCCAA AGGAAATATA CCTGCTGATA GTAGGTTTGC 
    CCTAGAAAAT TACAAGAACC TGGCCAACAG ATCTCTGGTT GACGACACAC 
    TGAGAAAGGT GAATGGGCTA AAACCAATTG CTTCTGAGCT TGGTGTTTCG 
    TTAGCCCAAC TTGCTATCGC GTGGTGCGCA TCGAACCCAA ACGTCTCATC 
    TGTGATCACT GGAGCCACAA AAGAAAACCA GATTGTTGAA AACATGAAGG 
    CCCTCGATGT CATTCCGCTG CTAACCCCAG AAGTCGTCGA CAAGATCGAA 
    GCGGTGGTCC AAAGCAAGCC GAAGCGCACC GAGTCATACA GATGAAGCGG 
    TACAGGGGGT GTGCAGAGTG TGCTCCAGGG ATTTCAGGAT TTACCCGGTG 
    GGATTCTTTT AGACGATATT ATTATCTTCC ATTGTCTTAT GTTTGGAAGC 
    TGCTTTATGT GCCTGGGTTT GTGTAGTTGG GAAATGGTGT CCAGTGGTAC 
    TCTGCTCTAT ATACATTTTG TCATGTGGAC CACTCACTTG TTGCTGTCGG 
    TGATATATAT ACCTTGGTCT TTTCCGTGT

    Gene models with high sequence identity

    1. AT1G04690.1 [+] show detail - potassium channel beta subunit 1
      E-value: 7e-167; Score: 583.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Potassium channel, voltage-dependent, beta subunit, KCNAB-related 1.7e-15
    FPrintScan Potassium channel, voltage-dependent, beta subunit, KCNAB-related 1.7e-15
    FPrintScan Potassium channel, voltage-dependent, beta subunit, KCNAB-related 1.7e-15
    FPrintScan Potassium channel, voltage-dependent, beta subunit, KCNAB-related 1.7e-15
    FPrintScan Potassium channel, voltage-dependent, beta subunit, KCNAB-related 1.7e-15
    HMMPfam Aldo/keto reductase 1e-70
    superfamily Aldo/keto reductase 1.1e-98
    Gene3D Aldo/keto reductase 4e-96
    HMMPanther Potassium channel, voltage-dependent, beta subunit, KCNAB-related 6.9e-134
    HMMPanther Aldo/keto reductase 6.9e-134

    See the detailed result >

    AT1G04690.1

    Model type
    Protein coding
    Short Description
    potassium channel beta subunit 1
    Computational Description
    potassium channel beta subunit 1 (KAB1); FUNCTIONS IN: oxidoreductase activity, potassium channel activity; INVOLVED IN: oxidation reduction, potassium ion transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Potassium channel, voltage-dependent, beta subunit, KCNAB-related (InterPro:IPR005399); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60690.1); Has 29181 Blast hits to 29146 proteins in 2493 species: Archae - 642; Bacteria - 19972; Metazoa - 899; Fungi - 1968; Plants - 978; Viruses - 0; Other Eukaryotes - 4722 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR