K33342

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33342

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33342

Determination of introduced cDNA(s)

  • J033115H20 - Rice Full-length cDNAs - Original: J033115H20

    full reading [+] show sequence

    Nucleotide sequence: J033115H20 - full reading 
    GATGTTTGCC CTCCCCCTCT AAAACCCCAG CACCCAGAGC CGCCGGCGGC 
    GGCGGCGACG GCGACTCGGA AAGGGGATCT CCGGCGACGT CTCGCGGATC 
    TCCGGTTGCG CTTCTTGGCG ACATGGCGAA GGGATCCAAG AAGAAGAAGG 
    GATCCAGTGC GACGAGGAAT CCGGCGGCCG AGCTCACCGA CGACCTCATC 
    GTGGAGATCC TCTCCCGCCT CCCCGCCAAG TCGGTCCGCC GATGCAGGCG 
    CGTATGCAGG CGGTGGCGCC GCCTCATCTC CGATCCCCAT CACCGCCGCA 
    AGAAGCTCCC CCAAACCCTC GCCGGCTTCT TCCACCTCAG CGTGAACGAA 
    TCACGCTTTC CCGTGGAAGC ACGCCATTTC GTCAATGTCT CCGGGATAGG 
    GGGACGCCTG CCTCACGTCT GCCCATCCTT CTCCTTCCTG CCTCGCTTTG 
    AGCGCATCAG TATGGTGGAC AGCTGCGGCG ACCTCCTCCT CTGCCAATGC 
    TTCGAGAGCT CAGATGCATT CCGCTACGTC GTATTCAATC CTTGTACTGA 
    GGAATGGATC GTCTTGCCGG AGTCCGGCTT CCACCCCAAG GACCGGGGGT 
    TCTGCGCCCG CTTGGGATTT GACCCTGATG TCTCCTCGCA ATTCCATGTC 
    TTTGAGTTTG TGCCATGTGA TGATGTGACT GGGGTGAAGA TCTACTCTTC 
    TGAAACCAGA GAATGGAATT ACAGGGAAAG TGAATGGTGC ACTGATACCG 
    GCATATCTGA TATTTGTAGA AGTGCCTTTT GCAATGGCAT GCTGCATTTG 
    GTTTCCTATC AGCGTTCAAT AGTGTCGGTA GATGTGGAAG GGAGGACATG 
    GCGTACAACG AAAGTGCCGA AAATGGAAGG GGTGGAAGAA GTGCGTGATT 
    GGTTGCCAGG TTCCATCTGT CAATCCGAAG GGAAATTGTA CTACCTCAGT 
    CAATACAACA CTGTCCCCAT AAGCCTGTCA ATATGGCTTC TTGAGGACTA 
    CTCGAAGGAT GAGTGGACAT TGAAGCATAG TGTGACTAAC GAACTGCTGT 
    ATGAGAAGAT AAACTCCAAG TACAAATCTA GCGAGTTCTG CTATGTGGTC 
    ATAGTTCACC TGGATTGCAA TTTGATTTAC TATATTACTA GAGACTACAC 
    GCTGATGGCA TATGACATGG ATCATAAGGA GTCACGTGTT ATTCAAGCTC 
    TTGGGTCAGA TTGTATACTG GAGTGTCTTC CCTATGTTCC ACTCTATGCA 
    GAAACACTGT CCAATAGGAG CTAAGTCAGT TTCTTTGTAG TACACCAGTG 
    TTGCTTGGCA TTTGTTCCCA TGAAATGATA TTTAGACCTT TTTCAAAATC 
    TATGTATTTG GGCCTTTTGT GAGGATCAGC ATGAACACAT TTCCAATTGT 
    CATTTGTGAA ATGTTGGTCT GCAACTTATT GTATCGTATG ATTAATGCTG 
    ATGTTTGTTA GCTATGATGT TTGTTAGAAT GTAAAAATTC AGTATGTCG

    Gene models with high sequence identity

    1. AT5G07610.1 [+] show detail - F-box family protein
      E-value: 1e-11; Score: 68.20

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart F-box domain, cyclin-like 8.4e-10
    HMMTigr F-box associated interaction domain 8.4e-05
    Gene3D no description 1.7e-05
    ProfileScan F-box domain, cyclin-like 9.948
    HMMPfam F-box domain, cyclin-like 5.8e-10
    HMMPfam F-box associated domain, type 3 0.00019
    HMMPanther F-BOX AND WD-40 DOMAIN PROTEIN 1 4.8e-05
    HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 4.8e-05
    superfamily F-box domain, Skp2-like 6e-18

    See the detailed result >

    AT5G07610.1

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G49610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR