K33345

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33345

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33345

Determination of introduced cDNA(s)

  • J013102I07 - Rice Full-length cDNAs - Original: J013102I07

    full reading [+] show sequence

    Nucleotide sequence: J013102I07 - full reading 
    GGTCTACGTC GACGGCAGCT TACTTTGAGA GCCTTGGTAG GATGAGCTCC 
    GCGGCCATGA AGCTCGCCGT GGTGGCCGCG CTCATCTCGG CCGCCGCCGT 
    GGGCGCCCGC GCCTGCCTCG ACGTCGGCTT CTACGACACG ACGTGCCCGA 
    CGGCGGAGAC GCTCATACAG CAGGTCGTCG CCGCCGCCTT CCGCAACGAC 
    TCCGGCGTCG CGCCGGCCAT GATCCGCATG CATTTCCACG ACTGCTTCGT 
    CAGGGGCTGC GACGGCTCGG TGCTGATCGA CACCGTGCCG GGGTCGACGA 
    CGAGGGCGGA GAAGGACGCC GCGCCAAACA ACCCGAGCCT CCGGTTCTTC 
    GACGTGATCG ACCGCGCCAA GTCGGCCGTC GAGGCGGCGT GCCCGGGCGT 
    CGTCTCCTGC GCCGACGTCG TCGCCTTCAT GGCGCGGGAC GGCGTCGTGC 
    TGTCCGGCGG CCTCGGCTAC CAGGTGCCCG CGGGGCGGCG CGACGGCCGG 
    ACCTCCCTCG AGGACGACGC GCTCAACTTC CTGCCGCCGC CAACGTCCAC 
    CGCCGCCGAC CTCGTCGCCA ACTTCACCGC CAAGAACCTC ACCGCCGAGG 
    ACATGGTCGT CCTCTCCGGC GCCCACACCA TCGGCGTCTC CCACTGCGAC 
    TCCTTCACCA ATCGCATCTA CAACTTCCCC AACACAACCG ATGGAATTGA 
    TCCGTCGTTG AGCAAGGCGT ACGCGTTCTT GCTGAAGGGC ATCTGTCCGC 
    CGAACAGCAA CCAGACGTTC CCGACGACGA CCACCTTCAT GGACATCCTG 
    ACGCCGACCA AGTTCGACAA CAGGTACTAC GTCGGGCTGA CAAACAACCT 
    CGGCCTCTTC CAGTCGGACG CGGCGCTGCT GACGGACGCC GCGCTCAAGG 
    CCACGGTGAA CTCCTTCGTG CGCAGCGAGG CGACGTTCCG GCTCAAGTTC 
    GCCAGGGCCA TGATCAAGAT GGGGCAGATC GGCGTGCTGT CCGGGACGCA 
    GGGCGAGATC AGGCTCAACT GCAGGGTCGT CAACCCTGTC AATGTCACTG 
    CTACTGCAGC TGATGATCAC CACCTTACTT CCTCTTCCTC CTCTTCTTCA 
    GATGAAGTGG CTGCAAGCTA ATTAATTAAC TGATTACCAC TGCTTGTTAG 
    TAGGTGTGCA TGCACAGACA GTGATTGAGA TGTGTGTGAA GTTCAGTGTG 
    ATGAGATGAT TAGATGCTTC AATTGTTTGT TGCAGTTACA GTGATTGAGA 
    GACATCAGAT CTTGTTTACC TGATGTAGGT GTTGGTGGTT GATACTGTCA 
    CCATCTTGTG CTTGTCAGTC TGAAAAATAA ATTGTTGCAT CCAGCATGCA 
    CTGGTGCC

    Gene models with high sequence identity

    1. AT1G05260.1 [+] show detail - Peroxidase superfamily protein
      E-value: 8e-65; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.672
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Plant peroxidase 1e-53
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-28
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    superfamily Haem peroxidase 1.4e-108
    Gene3D no description 1.6e-55
    HMMPfam Haem peroxidase, plant/fungal/bacterial 4e-77

    See the detailed result >

    AT1G05260.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Curator Summary
    Encodes a cold-inducible cationic peroxidase that is involved in the stress response. In response to low temperature, RCI3 transcripts accumulate in the aerial part and in roots of etiolated seedlings but only in roots of light-grown seedlings.
    Computational Description
    RARE COLD INDUCIBLE GENE 3 (RCI3); FUNCTIONS IN: peroxidase activity; INVOLVED IN: response to desiccation, response to cold, hyperosmotic salinity response; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G21770.1); Has 4433 Blast hits to 4402 proteins in 259 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 76; Plants - 4304; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR