K33346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33346

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33346

Determination of introduced cDNA(s)

  • J013116M06 - Rice Full-length cDNAs - Original: J013116M06

    full reading [+] show sequence

    Nucleotide sequence: J013116M06 - full reading 
    TGAGGTATTC CTTCGCTCGC GATCTCTCTC CTCCCCCTCT CGAATTTTGA 
    TCTCTTCCCG TAGAATTTTC GCTTCGTGTG TGTGTGTTTC CGTTCGATTG 
    GATCGGTGCT GGTAGTACTT GCTAGCATGA TCCCCCGCGT GATCTGTGGC 
    CGTTTGGTGG GATCGTTTTC CATCTGAATT CTCAGCTAAA CCCTGCTGTT 
    TTCGTAGCGA TTTTTTTTTG CTAGGCGTGC TTTAGTGGTA GGTTTGTCTG 
    CACGAATCGG GTGGGTCTCT GGTGGTTTTG AAGTGATCTG TGTGCGGTTG 
    ATGTGATTTT ACGGAGTATG GTTGGATCCG TCAAAAACCT GAGTTCTGTA 
    GGGGTTCTGT GGTTCTGGTC CATGTTTGCT TCTCAGAATT TTGCTTATAA 
    TTTTGATTTT TCTCGTCTTG ATCTATTGTT AGATTGACTC TGATGTACAG 
    TTAGCTCGGG AATACTGAAG CTACGATTGC GGGGCAGTAA TTCAAAATTG 
    CTCTTTGAAA TGTGCTACGG TACCAAATTC AAAAATCAAA CTTGAGATCA 
    TTGGCTTGCC CACTTGAAAC AGGAATTGGA TGGATTTCCC AACAATGCAT 
    CATTTTCTGT TTTTTGCTTC TGAATTTATG CCTTTATTCT GCATCGTGGA 
    TTACTCTTTA AATTGTTTGT ATGGATCCTC CAAAGAACGG TTAGTTCATC 
    ACCGTTTTTG TTCTTTGATC TTGCAGACTT GGCATTTGTA GAGTTTTTAG 
    ATTTATAGAT AGCAAAGATG TCGGCACAGG CGGAGCTTTC CCGTGAGGAG 
    AATGTGTACA TGGCCAAGCT CGCTGAGCAA GCCGAGAGGT ACGAGGAGAT 
    GGTCGAATTC ATGGAGAAGG TGGCCAAGAC GGTTGACTCT GAGGAGCTCA 
    CCGTGGAGGA GCGCAACCTC CTGTCTGTTG CATACAAGAA TGTGATTGGA 
    GCCCGTCGTG CGTCATGGCG TATTATCTCC TCCATTGAGC AGAAGGAGGA 
    AAGCCGTGGT AACGAGGACC GTGTCACACT CATCAAGGAC TACCGTGGCA 
    AGATCGAGAC TGAGCTCACC AAGATTTGCG ACGGCATTCT CAAGCTGCTT 
    GAATCCCACC TTGTCCCCTC TTCCACTGCC CCTGAGTCCA AGGTCTTCTA 
    CCTCAAAATG AAGGGTGACT ACTACAGGTA CCTTGCCGAA TTTAAGACCG 
    GGGCTGAGAG GAAGGATGCT GCTGAGAATA CCATGGTGGC ATACAAGGCT 
    GCTCAGGACA TTGCTTTGGC TGAGCTGCCT CCTACTCATC CAATTAGGCT 
    TGGGCTAGCT CTTAACTTCT CAGTGTTCTA CTATGAGATC CTCAACTCGC 
    CTGATCGTGC TTGCAACCTC GCAAAGCAGG CTTTTGATGA GGCCATCTCG 
    GAGCTGGACA CCCTGAGCGA GGAGTCCTAC AAGGACAGCA CTTTGATCAT 
    GCAACTCCTC CGTGATAACC TGACCCTGTG GACTTCAGAC ATCTCGGAGG 
    ACACCGCGGA AGAGATCAGG GAAGCTCCGA AGCGCGACTC CAGCGAGGGG 
    CAGTAAAGCC GGCTTTATGT GCCCTAGAAG CTTGTAGCTA GTGCTTTGCT 
    ACTGTGTAAT GACACCTATG TGGCTGTGAT TGTTGTCGGG AAATCTGGGG 
    CTCCCCCGTA TGTGAGGTTG CTAGCGATGG TTTTGCAGTC TCGCCTTTAA 
    GCTACTCGTA GCAGAGCAGG TGGGGGTCTG TGGAGCCAGG CCTGGTTGGG 
    GGTGGGGGAG CCTCTTGAAC TGCTTGGTGG CACTTCCTGT TTTTCTGTTT 
    GCCTTTTTAT TGGTGTTTAT TGTTATGGTC

    Gene models with high sequence identity

    1. AT3G02520.1 [+] show detail - general regulatory factor 7
      E-value: 6e-121; Score: 431.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily 14-3-3 protein 2.9e-107
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D 14-3-3 protein 1.9e-108
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    FPrintScan 14-3-3 protein 1.1e-88
    HMMPanther 14-3-3 protein 1.6e-207
    HMMSmart 14-3-3 protein 6.9e-211
    HMMPfam 14-3-3 protein 1.7e-115
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    HMMPIR 14-3-3 protein 5e-179

    See the detailed result >

    AT3G02520.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 7
    Curator Summary
    Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).
    Computational Description
    general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR