K33442

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33442

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33442

Determination of introduced cDNA(s)

  • J023128M19 - Rice Full-length cDNAs - Original: J023128M19

    full reading [+] show sequence

    Nucleotide sequence: J023128M19 - full reading 
    GGGCCACCTC GATCGCCGCC CCCTCTTCCC CTTCCCCTCC CGTCAGCCTC 
    CGATCGGATC CCGTCGTCGT CGTCCTCCTC CCCTTCTCCA GTGTGCAAGT 
    TCCTATTATT CTGTGGTGGA GCCATCTTCC ACTACCCTGT TTTCAATTAA 
    ACCTTTGTAA AGTTGCTGCT CAATGTCAAG TGCAAAACCA GTGCTTGATC 
    CTGCATTTCA AGGAGTTGGC CAAAAACCTG GCACAGAAAT ATGGAGGATT 
    CAAGATTTTA AGCCAGTTCC TTTGCCAAAA GCAGATTACG GTAAATTTTA 
    CAATGGAGAT TCATATATAG TTCTCCAGAC GACTTGCAGC AAAGGTGGTG 
    GCGCCTATCT TTTTGACATC CACTTTTGGA TTGGGAAAGA TTCTAGTCAA 
    GATGAAGCTG GGACTGCAGC AATTAAGACA GTTGAACTTG ACACCATGCT 
    CGGAGGTCGT GCAGTGCAGC ACAGAGAACT TCAAGGCTAT GAATCTGATA 
    AGTTCCTATC GTACTTTAAA CCATGCATTA TACCCTTGGA GGGAGGTTTC 
    GCCTCTGGGT TTAAAACACC TGAAGAGGAT AAGTTTGAAA CAAGGCTATA 
    TATTTGCAAA GGGAAGAGAG CTATCAGAGT TAAAGAGGTT CCATTTGCTC 
    GCTCGTCATT GAATCATGAT GATGTATTTA TCTTGGATAC GGAAAAGAAA 
    ATATATCAAT TCAATGGTGC AAACTCCAAT ATTCAAGAGA GAGCGAAAGC 
    TTTGGAAGCG ATTCAACATT TAAAGGAGAC ATACCACAAT GGAGTGTGTG 
    ATGTTGCGAT TGTTGATGAT GGAAAATTGC AAGCAGAATC AGATTCTGGT 
    GAATTCTGGG TTCTTTTTGG AGGTTTTGCA CCAATAGGGA AGAAAGCTAT 
    ATGTGACGAT GATGTTGTTC TTGAAACCAC AGCCCCCAAG CTTTACAGCA 
    TCAATAATGG TCAATTAAAG TTAGAAGACA CAGTTCTGAC AAAATCAATT 
    CTTGAGAACA ATAAGTGCTT TTTGGTCGAC TGTGGGTCTG ATTTATTTAT 
    ATGGGTTGGT CGACTAACAC AAGTGGAGGA GAGAAAAGGC TGGCAAGTGC 
    AGCAGTTGAG GAATTCATTG CTACTCAAAA TAGGCCAAAG ACAACAAGAG 
    TAACCCGAGT GATTCAAGGG TACGAGAATC ATACATTCAA GTCTAAGTTT 
    GAATCATGGC CAGTAAATAG TGCAGGAAGT GCTGGCGCGG AGGAAGGCCG 
    AGGGAAAGTT GCAGCTCTGT TGAAGCAACA AGGAGTTGAT ATCAAGGGAG 
    CCTCAAAAAG CAGCGCTCCA GTAGACGAGG AAGTTCCTCC TTTGCTAGAA 
    GGCGATGGAA AACTTGAGGT TTATTGTGTC AATGGCAGTG CTAAGACTGC 
    TCTTCCAAAG GAGGAGCTTG GAAAGTTTTA CAGCGGAGAT TGCTATATTG 
    TTCTCTATAC ATATCATTCT GGTGACAAGA GAGAAGAATT TTATTTGACT 
    TATTGGATTG GCAAGGACAG CATACCGGAA GATCAAGAGA TGGCTTTCCA 
    AACAGCTAAT TCAATTTGGA ATTCACTGAA AGGAAGGCCT ATTCTGGGTC 
    GTATTTATCA AGGGAAAGAA CCACCACAAT TTATTGCCCT TTTCCAGCCC 
    ATGGTCATTC TAAAGGGTGG AATCAGCTCT GGATACCAGA AATTTGTAGA 
    AGAAAAGGGC TTGAAGGATG AAACATATTC TGGCGATGGC ATTGCTCTTT 
    TTCGAATTTC TGGAACATCA ATTCACAACA ATAAAGTGCT TCAAGTTGAT 
    GCGGTGTCAT CAAACTTGAG TCCCACGGAT TGTTTTGTCC TGCAATCTGG 
    AAATTCAATG TTTACATGGA TTGGCAATGC CAGTTCGTAT GAACAGCAAC 
    AATGGGCTGC AAAAGTTGCT GAATTCTTGA AGCCTGGTGT TGCTGTCAAA 
    CATTGCAAGG AGGGAACTGA GAGCTCTGCC TTTTGGTTTG CTCTTGGTGG 
    AAAGCAGAAT TACACAAGCA GAAATGCCAC ACATGATGTT GTTAGAGAGC 
    CTCACTTGTA TACATTCTCA TTGAGGAATG GGAAACTGGA GGTCACTGAA 
    ATTTTCAACT TTTCACAAGA TGATTTGCTG ACTGAAGACA TGATGGTTCT 
    TGATACACAT GGGGAAGTCT TTGTTTGGAT GGGTCAGTGT GTGGATGCTA 
    AAGAGAAGCA GAAGGCATTT GAAATTGGCC AGAAATATGC AGAACATGCG 
    GCGGCCTTCG AATCTCTTTC TCCTGATGTG CCTCTGTACA AAGTCGTTGA 
    AGGGAATGAA CCATGCTTCT TCAGAACTTA CTTCTCCTGG GATAACACAA 
    GATCTGTGAT TCATGGAAAT TCATTTCAGA AGAAGCTTTC ACTTCTTTTC 
    GGAATGCGCT CAGAGAGTGG ATCTAAGAGT TCAGGTGATG GTGGACCAAC 
    TCAGAGGGCA TCAGCATTGG CTGCTCTTTC ATCTGCATTC AACCCATCTT 
    CCCAAAAGAA TAAGGGTAAT GATAGGCCTA AAAGCTCTGA TGGTGGACCC 
    ACTCAGCGCG CTTCAGCAAT GGCTGCCTTA ACATCAGCGT TCAATCCATC 
    AGCAAAACCC AATAGCCCAC CACAACGTGC AGGTCAAGGT TCTCAGCGAG 
    CAGCTGCTGT TGCTGCGCTG TCTAATGTTT TGACTGCTGA GGGTTCATCT 
    CAAAGCCCAC GCATAGGTGA TGCAGATACA GCTGAACTAA CTCCGTCTGC 
    TGCATCCCCT CTGTCTGAAG GAGCATCAGA ATTTTCCGCT GATAAAGATG 
    CCCCAGGAGA TGGGGCATTA TCTGAGGGAG GGCGAACTGA GCCTGACGTA 
    TCAGTGGAAC AGACTGCTAA TGAAAATGGA GGTGAAACAA CCTTCAGCTA 
    TGATCGGCTG ATATCAAAAT CTACCAACCC TGTTCGTGGG ATAGATTACA 
    AACGCAGAGA GACATATTTG TCGGACAGCG AATTCCAGAC TGTATTTGGT 
    ATAACGAAGG AAGAGTTCTA CCAGCAGCCA GGGTGGAAAC AAGAACTACA 
    GAAAAGGAAG CATGATCTTT TCTGAAGCAT GAATCTCTTT CCCACTACAA 
    AGGCTGCATG TTTACTAGTT TTGCTTGATT GGTGACATGG TACGTGAGAG 
    GCCATGTTTG CCAGCAATCT TGGTCATGTT TCGAAGACGA TTGGCCGGTG 
    GCTTACTCTG CCGTTATCCC AAGTTTTACA GGGTATTCTT TATTTGTACA 
    TGGTCTGCTC TATGCAGCAC CAAGGGCGTC ACTACATTGT TCCGAGCTTT 
    GTTCTGGTTC TTGTCCATCC ATGTGTATAT TATTTTTACC CTC

    Gene models with high sequence identity

    1. AT3G57410.1 [+] show detail - villin 3
      E-value: 0; Score: 698.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VILLIN 1-4 1.3e-252
    HMMPanther Gelsolin 1.3e-252
    HMMPanther VILLIN 1-4 6.9e-193
    HMMPanther Gelsolin 6.9e-193
    HMMPfam Gelsolin domain 3.6e-10
    HMMPfam Gelsolin domain 1.7e-07
    HMMPfam Gelsolin domain 7.6e-05
    HMMPfam Villin headpiece 1e-14
    HMMPfam Gelsolin domain 5e-19
    HMMPfam Gelsolin domain 7.2e-14
    HMMPfam Gelsolin domain 7.7e-06
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 2.9e-49
    FPrintScan Gelsolin 1.6e-16
    FPrintScan Gelsolin 1.6e-16
    FPrintScan Gelsolin 1.6e-16
    FPrintScan Gelsolin 1.6e-16
    HMMSmart Gelsolin 5e-20
    HMMSmart Gelsolin 5.9e-14
    HMMSmart Gelsolin 8.7e-16
    HMMSmart Villin headpiece 1.5e-15
    HMMSmart Gelsolin 5.7e-29
    HMMSmart Gelsolin 8.6e-23
    ProfileScan Villin headpiece 19.332
    Gene3D no description 9.1e-06
    Gene3D no description 1e-36
    Gene3D no description 4e-08
    Gene3D no description 9.7e-22
    Gene3D Villin headpiece 6.9e-17
    Gene3D no description 2.3e-44
    Gene3D no description 1.5e-23
    Gene3D no description 5.8e-05
    superfamily Actin depolymerizing proteins 3.3e-28
    superfamily Actin depolymerizing proteins 1.3e-25
    superfamily Villin headpiece 6.9e-22
    superfamily Actin depolymerizing proteins 3.3e-21
    superfamily Actin depolymerizing proteins 1.7e-07
    superfamily Actin depolymerizing proteins 1.4e-32
    superfamily Actin depolymerizing proteins 3.2e-24
    superfamily Actin depolymerizing proteins 4.8e-12

    See the detailed result >

    AT3G57410.1

    Model type
    Protein coding
    Short Description
    villin 3
    Curator Summary
    Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.
    Computational Description
    villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR