K33519

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33519

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33519

Determination of introduced cDNA(s)

  • J033046F03 - Rice Full-length cDNAs - Original: J033046F03

    full reading [+] show sequence

    Nucleotide sequence: J033046F03 - full reading 
    GGAGGCCACC CGCTCCGCCG CCTCCATTTC GTCGCCGTCG CCGTTGCCGT 
    CGCCGCCGCG GCGGCGTCTC TCTCCTCCGC GTGGGCTGCT CTGCTTCGTT 
    TCCGCGGCGG AGGCGGGGCG GGGCTGGGCC TGTCGGCCAG GGACAGGGAG 
    CCAGGGAGGT TGCCGCTCAT GGAGATGGAA GATAGCGGTC GCGGCGTCGT 
    GGGCGCCGGG AAGCGCGGCG TCGCGGAGAC CTTCTCCAGG CTCCGGGAGC 
    AGGGCAAGAC TGCATTCATT CCATTCATCA CCGCCAGTGA CCCTGACTTG 
    GCAACCACAT CGAAAGCGTT GAAGATCCTT GATTCCTGTG GTTCAGATGT 
    GATTGAGCTG GGTGTACCTT ACTCGGATCC GTTGGCTGAT GGGCCGGTTA 
    TTCAGGCTGC AGCAACGCGT GCTCTTAAGA AAGGCGCTAC ATTTGATTCC 
    GTCATAGCTA TGCTCAAGGG GGTTATACCT GAGTTGTCTT GTCCAATAGT 
    TATCTTCACA TACTACAACC CAATTTTAAA GCGCGGAGTG AGTAACTTCA 
    TGGCTATCAT TAAACAAGCC GGCGTACATG GTCTTGTAGT ACCTGATCTT 
    CCTTTGGAAG AGACAGCGCT GTTGAGGAAT GAGGCTGTCA TGCATGGCAT 
    AGAGCTGGTG CTGCTTACAA CACCAACCAC ACCAACAGAG AGGATGAAGG 
    AGATTGCAAA AGCTTCAGAA GGATTTATTT ATCTTGTAAG TTCTGTTGGA 
    GTTACAGGTG CACGCTCAAA TGTAAATTTG CGTGTTGAGT ACCTTCTTCA 
    GGAGATCAAG AAGGTTACAG ACAAACCTGT TGCTGTTGGC TTTGGCATAT 
    CGACTCCAGA GCATGTAAAG CAGATTGCAG GCTGGGGAGC AGATGGTGTG 
    ATCATCGGCA GCGCTATTGT TAGACAGTTA GGAGAGGCTG CTTCACCTGA 
    AGAAGGGTTG AAAAGAGTAG AAGAGTATGC CAAGAACATG AAGGCTGCTA 
    TGCCTTGAGA TGAGCGGTTC CATGCCTCCA CCCATGCAAG CCAACAAGAA 
    GGCAGTACAT CGTTTTTTTT GTCTGATTAA ATTGCATAGC ATTTTAATCC 
    AGTATTTTCT TGTATGATTC ATGAATCATG ACTGTATCTC ACTCTAGTAC 
    TATCCTTCTG TTAACATACA GATGAATAAT AAAGAAGGTA GCTCAGAAAC 
    TGTCTGAAAT AGCTGTCCCA GAATTGCATC TCCAATTTTG TAAGTTCATA 
    AATAAAATCC AATGAACATT TATGGAGTAG TAGT

    Gene models with high sequence identity

    1. AT4G02610.1 [+] show detail - Aldolase-type TIM barrel family protein
      E-value: 3e-101; Score: 365.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Tryptophan synthase, alpha chain 8.8e-99
    superfamily Ribulose-phosphate binding barrel 1.6e-95
    HMMPanther TRYTOPHAN SYNTHASE ALPHA SUBUNIT 4.1e-72
    HMMPanther SER/THR DEHYDRATASE, TRP SYNTHASE 4.1e-72
    HAMAP Tryptophan synthase, alpha chain 36.873
    Gene3D Aldolase-type TIM barrel 1.6e-88
    HMMTigr Tryptophan synthase, alpha chain 6.2e-94
    PatternScan Tryptophan synthase, alpha chain, active site 0

    See the detailed result >

    AT4G02610.1

    Model type
    Protein coding
    Short Description
    Aldolase-type TIM barrel family protein
    Computational Description
    Aldolase-type TIM barrel family protein; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, alpha chain, active site (InterPro:IPR018204), Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate binding barrel (InterPro:IPR011060), Tryptophan synthase, alpha chain (InterPro:IPR002028); BEST Arabidopsis thaliana protein match is: tryptophan synthase alpha chain (TAIR:AT3G54640.1); Has 7706 Blast hits to 7706 proteins in 2293 species: Archae - 225; Bacteria - 4607; Metazoa - 6; Fungi - 175; Plants - 137; Viruses - 0; Other Eukaryotes - 2556 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR