K33542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33542

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33542

Determination of introduced cDNA(s)

J013062F20 - Rice Full-length cDNAs - Original: J013062F20

full reading [+] show sequence

GATTCATGTT TTGTTTTCTA TCGCATGTAT TGACTAAGGA TAGGAAATCA 
AACCTACCAC ATATGGGTGA AATCGATTAT TCGTTCCATC ATGATTGGGG 
TAGGTTAGTT AGGGATCTAT TTATAGCCAC AGAACATTGC CCTGGAGAAT 
ACACTGCTGC AGTGCTGCTT AAGCTCGCCA TCCAGCCGCA ATGGAAGATC 
AGAGCCTGAA GCCCATCCGT TGCAAAGCGG CGGTCTGTAG AGCGGCCAGT 
GAGCCACTGA TCGTCGAGGA GATCGTCGTC GATCCTCCGA AAGCCTACGA 
GATCCGCATC AAGATCATCT GCACCTCCCT GTGCCACACC GATGTCACCC 
TCTGGCACAA GGTAGACCCT GCCTTTCCAA GAATCTTGGG CCACGAGGCC 
TACGGGGTGG TGGAGAGCGT GGGGGAGAAC GTGGAGGGGC TCGCGGCGGG 
GGACACGGTG GTGCCGACGT TCATGGGGCA GTGCGACTCG TGCGCCAGCT 
GCGCGGCGGA GTGGACGAAC CAGTGCACCG CCGTGCCGTT CACCATGGGC 
CCCGGGATGC GGCGCGACGG CACAACCAGG TTCTGGGACG GCGAAGGGAA 
GCCGCTCAGC GACACGGTGG CCGTCACCAG CTTCAGCCAG TACACCGTCG 
TCGACGTCAA CCAGGTCGTC AAGGTCGACC CCGCCGTGCC GCCCAAAATC 
GCCTGCCTCC TCGGCTGCTG CGGCGGCACC GGGGTAGGAG CAGCATGGAG 
GTTGGCCAAA GTGCAACCCG GTTCGTCGGT GGTTGTCTTC GGGCTGGGAT 
CCGTCGGATT GGCGGTAGTG CAAGGGGCAA AAATGTGTGG AGCAACGAAG 
ATTATCGGTG TTGATTTGAA TCCTAACAAA GAGGAAGTTG GAAAAGAGTT 
CGGTGTGACT GATTTCGTCA ATCCATCCCA ACTCGGCGAC AAATCCGTCA 
GTGAGGTGAT CAATGCGATG ACAGACGGTG GCGCTGACTA CAGCTTCGAG 
TGCATCGGTA TCTCGTCGGT GATGACTGAG GCAGTCAGAA GCACCAAATC 
AGGACGGGGC AAGACGATCA TTCTGGGGGT CGAGAAGGAC AGCCAGCCGT 
TGTGCCTGCC GTCCTTCGAG TTTCTGTTCG GCAAGTGCGT CATGGGATCG 
CTCTTCGGTG GGGCCAAACC CAAAACTGAC ATCCCAATCC TCGCCGAGAA 
ATGCATGAAC AAGGAGCTGG AACTGGAGAA GCTGGTCACT CATGAGGTAG 
GCCTGACGGA GATAAACACA GCCTTCGATT TGCTTCTGCA GGGAAAGAGC 
CTGAGATGCA TCATATGGAT GGACAAGTGA TGGCCACAAC TTGGGGTGGG 
GATGCTTTTC CTGTTCAGGT TCTGAATTTG GTTGATTGAT GTGTTCAATA 
AGTATGCTGT TTATTTCGCT GGTGTTGCTG AAACAAGGAG TAATACACTA 
ATACGTCCAT CAGCCATCAC GAATAACTGA TGTACACTTA ATTTCATGGG 
CGGTTAGCAG CATCCTCCTT TCTGAATCAA TGCAGAATAT TTTCATTCCA 
AAAGAAAAGG ATTATCTTTC TTATGGAGTA TGTTCAGATT TGCGTGTAAA 
GAACTGGATT AGTCCAATCT TGTTTCTTCT TTTTTTTTGA TCTCAGTCCA 
ATCTTGTTTC C

Gene models with high sequence identity

AT1G22440.1 [+] show detail - Zinc-binding alcohol dehydrogenase family protein
E-value: 9e-95; Score: 344.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	ALCOHOL DEHYDROGENASE	9.6e-86
HMMPanther	Alcohol dehydrogenase superfamily, zinc-containing	9.6e-86
Gene3D	no description	1.5e-55
PatternScan	Alcohol dehydrogenase, zinc-containing, conserved site	0
superfamily	GroES-like	8.8e-60
superfamily	NAD(P)-binding domain	8.3e-47
superfamily	GroES-like	2.3e-13
HMMPfam	Alcohol dehydrogenase GroES-like	3e-22
HMMPfam	Alcohol dehydrogenase, zinc-binding	5.3e-20

See the detailed result >

AT1G22440.1

Model type: Protein coding
Short Description: Zinc-binding alcohol dehydrogenase family protein
Computational Description: Zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT1G22430.2); Has 32607 Blast hits to 32587 proteins in 3168 species: Archae - 747; Bacteria - 20763; Metazoa - 1197; Fungi - 2370; Plants - 4104; Viruses - 3; Other Eukaryotes - 3423 (source: NCBI BLink).
Link: InterPro Scan - TAIR