K33624

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33624

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33624

Determination of introduced cDNA(s)

  • J023001F16 - Rice Full-length cDNAs - Original: J023001F16

    full reading [+] show sequence

    Nucleotide sequence: J023001F16 - full reading 
    GGTTTTTGCG ACTTAAAACC CTCTCCTTGT TCTTCCCAAC TTCGCAAGAC 
    GCGATTCAAT GGTGGACGAG ATTGGAGCGG CAAAGAAGGG GTGAAGAGGT 
    GAATCGCCCC TCTCTTTTCT TGAGTTCTTG GTCAGGTTCG TAGTCAGTAT 
    GCCTGAATCG AGCTCAGATC CTAACAACGG GAGAGGAAAG TCATCCAAGA 
    GGAATCTCCC TTCTTGGATG GGTTCGAAAG ACGGGGAGGA AAATCCAGGC 
    AAGAAGAAGC ACATGGCCAC CCACGAGAAG GTGCAGAAAG GATCGGATTT 
    CTCCAAACTT TTGGATGGGG TGGTCTTTGT ACTTTCAGGG TTTGTGAACC 
    CTGAAAGAGG CACATTGCGC TCCCAAGCAT TGGATATGGG AGCCGAGTAT 
    CGACCCGATT GGACATCAGA TTGCACACTT CTCGTTTGTG CATTTGCCAA 
    TACCCCCAAG TTTCGACAAG TCGAATCGAA CAATGGAACC ATTGTCTCGA 
    AGGACTGGAT CTTAGAATCT CACAGCCAAA GAAAACTTGT TGATATTGAG 
    CCTTACCTTA TGCATGTTGG AACCGTGGAG AAAAAATAAA GAGCTAGTTG 
    AATCTGACGA AGATCAGAAG AAGCCACATA AAGAGCATCA GAAGCAAGTT 
    GATCGATCTC GTATCAAGAC ATCTCCCTCT GCAGGCATAG AGGCAAAACA 
    TTCAGATGTT ACTAGTAAGC AATTTTCTCC AACAAAAATA AAACAATGGG 
    CAAAGAATGA TTTAGCACAG ACAATATCAT GGTTAGAGAG CCAAGAAGAG 
    AAGCCAGAAC CAAATGAGTT GAAGGCAATA GCTGCTGAAG GGGTTATCAC 
    TTGTTTGCAA GATGCCATAG AATCTCTCAA GCAAGGGAAT GATGTCAAGG 
    GAGTGGCGGA GCAGTGGAGC TTTGTCCCCC ATGTCATCAA TGAACTGGCG 
    GAACTTGATG GAAGAAGAAA AGAGGGATCG TTATCGAAAG AACAACTCTC 
    CCGGCTAGCA ATCAAATGCA AAAAGATTTA TCAGGCTGAG TTTGCCCACA 
    TGCATGATAA TGACAAGAAG CATCAGAGCA AGCCTAGATC AGATGATGCT 
    CAGTATGACA GTGATGACAC CATCGAAATG ACGGAAGAAG AGATTGATCT 
    CGCATGCAGG CAACTCCCTG GGGTATGCGG GAGGCAGTAG TTTTAGGTCC 
    GTTCTTCAGA AGATGCAGTA AGAATACTGA ATATCCATCT TTCCCAATGG 
    TGTATGTGTC TGGGATCTGG ATAGCTGCAT GTGTAAACTG AACAAAATAT 
    GGTTAATCTA GATCAAAATT GCACC

    Gene models with high sequence identity

    1. AT1G80420.3 [+] show detail - BRCT domain-containing DNA repair protein
      E-value: 1e-77; Score: 144.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily BRCT 5.8e-22
    HMMSmart BRCT 3e-11
    HMMPfam BRCT 3.3e-10
    ProfileScan BRCT 16.873
    HMMPanther DNA-REPAIR PROTEIN XRCC1 2.6e-19

    See the detailed result >

    AT1G80420.3

    Model type
    Protein coding
    Short Description
    BRCT domain-containing DNA repair protein
    Computational Description
    ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); Has 261 Blast hits to 261 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 25; Plants - 49; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR