K33644

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K33644

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K33644

Determination of introduced cDNA(s)

  • J033117N24 - Rice Full-length cDNAs - Original: J033117N24

    full reading [+] show sequence

    Nucleotide sequence: J033117N24 - full reading 
    GACTCCCTCC GCTCCTCCGC TCCTCGCCTC TTTTACCCGC TCTTCCCCCC 
    GATCTCCCCG GACTCCCACA GCCGCAGCGA ACAAATCCCG CGCGGGTTGG 
    GAAGAGCGAG CTCGTGAGGA GAGCAGAGGG AAAGCGCGAG GGGGAAGGAG 
    GAGGAAAGGT GCACAAGGTC AGACTAAGTT TGCGTTGAAG AACAAAGGAG 
    AGGAAAAATG TCGCCTGCTG AGGCATCGCG TGAGGAGAAT GTGTACATGG 
    CAAAGCTTGC CGAGCAGGCT GAGCGTTACG AGGAAATGGT CGAATTCATG 
    GAGAAGGTGG CAAAGACCAC TGATGTTGGT GAGCTCACCG TTGAGGAGCG 
    GAACCTGCTT TCTGTGGCTT ACAAGAACGT GATTGGTGCT CGGAGGGCAT 
    CGTGGAGGAT CATCTCTTCT ATTGAGCAGA AGGAGGAGAG CCGTGGGAAT 
    GAGGCATATG TTGCATCAAT TAAGGAGTAC CGTAGCAGGA TTGAAACTGA 
    GCTCAGCAAG ATCTGTGATG GTATCCTTAA GCTTCTGGAT TCCCACCTTG 
    TCCCATCTGC CACTGCTGCA GAGTCCAAGG TGTTCTACCT GAAAATGAAG 
    GGTGACTACC ACAGGTACCT TGCTGAGTTT AAGTCAGGAG CTGAGAGGAA 
    GGAAGCAGCT GAGAACACTC TTGTGGCATA CAAGTCTGCC CAGGATATTG 
    CACTCGCTGA CCTGCCTACA ACTCACCCGA TAAGGCTTGG ACTTGCACTG 
    AACTTCTCAG TGTTCTACTA TGAGATACTG AACTCACCAG ACCGTGCTTG 
    CAACCTTGCA AAGCAGGCGT TCGACGATGC TATTGCTGAA CTGGACACTC 
    TTGGCGAGGA GTCTTACAAG GACAGCACCT TGATCATGCA ACTTCTTCGT 
    GACAATCTGA CTCTCTGGAC CTCTGACAAT GCGGAGGATG GTGGTGACGA 
    GATCAAGGAA GCAGCGAAGC CTGAAGGAGA GGGCCACTAA TCTGTCCTGA 
    AGTCTATTTC TGAGTCCATT TACTCAGCTA CCTGCTGTAT TACTGGATCA 
    TAAGATGTAC TAGGATCAAT TGCTATGTGG AATCATAAGA TTAGGGCTGC 
    GTATGTCAAA ATGTGTCGAG CTGAAGTACC CAGTGGACAC AGTTTATGTG 
    CACTACATTG CTTCCGTGAC TTATTTACTA GTTAATTAGC AACTTTCAAC 
    CACTTCCTGT ATTTGCAGCA CATTATTAGT ATCGCTGTAT TAGCGTTTTC 
    CATGGGCTGG TTATGATTGA GAATACAGGC CAGGCATTGC ATGTCCTTTA 
    TTTGTAAGCT CGATGTGGAC ACGTTGGAAT TCGTGCTTTT CTTATTGTCA 
    TGAGAGTTGA GATGATGTTT GGATTGGCGG CT

    Gene models with high sequence identity

    1. AT3G02520.1 [+] show detail - general regulatory factor 7
      E-value: 2e-121; Score: 432.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam 14-3-3 protein 6.3e-114
    HMMSmart 14-3-3 protein 1.1e-209
    HMMPanther 14-3-3 protein 1.3e-205
    Coil coiled-coil 0
    PatternScan 14-3-3 protein 0
    PatternScan 14-3-3 protein 0
    FPrintScan 14-3-3 protein 8.7e-89
    FPrintScan 14-3-3 protein 8.7e-89
    FPrintScan 14-3-3 protein 8.7e-89
    FPrintScan 14-3-3 protein 8.7e-89
    FPrintScan 14-3-3 protein 8.7e-89
    FPrintScan 14-3-3 protein 8.7e-89
    HMMPIR 14-3-3 protein 2.4e-181
    superfamily 14-3-3 protein 4.4e-105
    Gene3D 14-3-3 protein 6.5e-107

    See the detailed result >

    AT3G02520.1

    Model type
    Protein coding
    Short Description
    general regulatory factor 7
    Curator Summary
    Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν).
    Computational Description
    general regulatory factor 7 (GRF7); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: nuclear envelope, chloroplast stroma, plasma membrane, chloroplast, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 3 (TAIR:AT5G38480.1); Has 2692 Blast hits to 2682 proteins in 382 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 312; Plants - 765; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR